View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3946_high_5 (Length: 277)

Name: NF3946_high_5
Description: NF3946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3946_high_5
NF3946_high_5
[»] chr1 (4 HSPs)
chr1 (20-256)||(46269494-46269724)
chr1 (19-268)||(48241687-48241936)
chr1 (27-203)||(14206720-14206896)
chr1 (57-101)||(45814546-45814590)
[»] chr7 (2 HSPs)
chr7 (99-268)||(1717823-1717992)
chr7 (58-210)||(6800215-6800367)
[»] chr4 (4 HSPs)
chr4 (108-235)||(53481157-53481284)
chr4 (19-83)||(53481284-53481348)
chr4 (58-135)||(12377475-12377552)
chr4 (36-215)||(48489673-48489852)
[»] scaffold0693 (2 HSPs)
scaffold0693 (19-83)||(58-122)
scaffold0693 (108-165)||(1-58)
[»] chr8 (3 HSPs)
chr8 (58-119)||(42452476-42452537)
chr8 (165-214)||(38246471-38246520)
chr8 (52-116)||(15863838-15863902)
[»] chr3 (3 HSPs)
chr3 (19-76)||(47746868-47746925)
chr3 (143-245)||(47746727-47746829)
chr3 (62-115)||(8753882-8753935)
[»] chr2 (3 HSPs)
chr2 (43-265)||(40366377-40366599)
chr2 (58-210)||(40368891-40369043)
chr2 (165-211)||(34116101-34116147)
[»] chr6 (1 HSPs)
chr6 (143-211)||(19249147-19249215)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 46269724 - 46269494
Alignment:
Q  20 gagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttct 119  Q
    |||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  46269724 gagggatatggagaggcgtggttgggagtttgatggtagggcatgggtgtggagacgtcaattatttgcgtgggaggatgattctttgagggagtgttct 46269625  T
Q  120 ctgttattatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacct 219  Q
    |||||||||| |||||       |||||||||||||| |||||||      |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46269624 ctgttattatctaacatctttttgcaggaaactgttcgtgacaaa------tggctgttagatcccattcatggttactcggtgaggggagtctacacct 46269531  T
Q  220 ttttgataagcaatggtgctatggtgaacaggtctag 256  Q
    |||||  ||||||||| ||||||||||||||||||||    
T  46269530 ttttgtcaagcaatggcgctatggtgaacaggtctag 46269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 48241687 - 48241936
Alignment:
Q  19 tgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttc 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||| || |||| ||||||||||||||||||||  ||||||||    
T  48241687 tgagggatatggagaggcgtggttgggggtttgatggaagggcatggggatggagacgtcgtttgtttgcgtgggaggaggattctttgaaagagtgttc 48241786  T
Q  119 tctgttattatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacc 218  Q
    | ||||||||  |||||       |||||||| || |||||||||||||| ||||||||||||||||||||||||||| || |||| | ||| ||||||     
T  48241787 tttgttattagctaacattattttgcaggaaattgctcatgacaaatggcagtggctgttagatcccattcatggttattcagtgaagagagtctacact 48241886  T
Q  219 tttttgataagcaatggtgctatggtgaacaggtctagtgttgatgatgt 268  Q
    ||||||| ||||||||| ||| ||||||||| ||||  ||||||||||||    
T  48241887 tttttgacaagcaatggcgctttggtgaacatgtcttatgttgatgatgt 48241936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 14206720 - 14206896
Alignment:
Q  27 atggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttat 126  Q
    |||||| | |||||||||||  || ||||  |||| || | ||||||||  || || |||| ||||||| |||| ||| ||||||| |||||||||||||    
T  14206720 atggagggtcgtggttggggaattaatggaggggcatgagagtggagactccgtttgtttgcgtgggagtaggagtctgtgagggaatgttctctgttat 14206819  T
Q  127 tatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtg 203  Q
    ||  |||||       |||||| | ||| || |||| |||||||||| ||||||| || |||||||| ||| |||||    
T  14206820 tacgtaacattgttttgcaggataatgtccaagacacatggcggtggatgttagaccctattcatgggtacacggtg 14206896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 45814590 - 45814546
Alignment:
Q  57 agggcgtgggtgtggagacgtcgattatttgtgtgggaggaggat 101  Q
    |||||||||||||||||||| || || |||| |||||||||||||    
T  45814590 agggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggat 45814546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 99 - 268
Target Start/End: Original strand, 1717823 - 1717992
Alignment:
Q  99 gattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttact 198  Q
    ||||||||||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717823 gattctttgagggagtgttctctgttattatctaacatctttttgcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttact 1717922  T
Q  199 cggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctagtgttgatgatgt 268  Q
    |||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  1717923 cggtgaggggagtctacacctttttgtcaagcaatggcgctatggtgaacaggtctagtgttgatgatgt 1717992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 6800215 - 6800367
Alignment:
Q  58 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttca 157  Q
    ||||||||||||||||||| || || |||| |||||||||||| | | |||||||| ||||| || ||||| ||||||       ||||||  ||||||     
T  6800215 gggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggaatatgtgagggagcgttctttgctattacataacattgttttgcaggattctgttcg 6800314  T
Q  158 tgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggag 210  Q
    ||| |  |||| |||| ||||||| ||| ||||||| ||| |||| |||||||    
T  6800315 tgatacttggcagtggttgttagaccccgttcatgggtacacggttaggggag 6800367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 53481284 - 53481157
Alignment:
Q  108 agggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggg 207  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53481284 agggagtgttctctgttattatataacatttttttgcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaagg 53481185  T
Q  208 gagcctacacctttttgataagcaatgg 235  Q
    |||||| ||||||||||| |||||||||    
T  53481184 gagcctgcacctttttgacaagcaatgg 53481157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 53481348 - 53481284
Alignment:
Q  19 tgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgatta 83  Q
    |||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  53481348 tgagggatatggagaggcgtggttgggggtttgatggtggggcatgggtgtggagacgtcaatta 53481284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 12377552 - 12377475
Alignment:
Q  58 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataaca 135  Q
    ||||||||||||||||||| || || |||| |||||||||||| ||| |||||||||||||| || ||||| ||||||    
T  12377552 gggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggaatctgtgagggagtgttctttgctattacataaca 12377475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 215
Target Start/End: Complemental strand, 48489852 - 48489673
Alignment:
Q  36 cgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataaca 135  Q
    |||||||||||  | |||||  |||||| || ||||||||||||||| |||| |||| ||||||| | | ||||| | ||||||||||| ||  ||||||    
T  48489852 cgtggttggggaatcgatggaggggcgtaggagtggagacgtcgattgtttgcgtggaaggaggagtttgtgaggaaatgttctctgttgttgcataaca 48489753  T
Q  136 nnnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctac 215  Q
           |||||| ||| |||||||||  ||||||||| ||||||| || |  ||||||||| ||||| | |||||||||    
T  48489752 ttgttttgcaggatactattcatgacacttggcggtggatgttagacccaacccatggttacacggtgcgaggagcctac 48489673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 122 - 58
Alignment:
Q  19 tgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgatta 83  Q
    |||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  122 tgagggatatggagaggcgtggttgggggtttgatggtggggcatgggtgtggagacgtcaatta 58  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 58 - 1
Alignment:
Q  108 agggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaat 165  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  58 agggagtgttctctgttattatataacatttttttgcaggaaactgttcatgacaaat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 42452476 - 42452537
Alignment:
Q  58 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttct 119  Q
    ||||||||||||||||||||||  |||||| |||||||||||| ||| ||||||||||||||    
T  42452476 gggcgtgggtgtggagacgtcgtctatttgcgtgggaggaggaatctgtgagggagtgttct 42452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 38246520 - 38246471
Alignment:
Q  165 tggcggtggctgttagatcccattcatggttactcggtgaggggagccta 214  Q
    |||||||||||||||||||| |||||||| || |||||| ||||| ||||    
T  38246520 tggcggtggctgttagatcctattcatggctattcggtgcggggatccta 38246471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 15863838 - 15863902
Alignment:
Q  52 atggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgt 116  Q
    |||||||||||||||||||||||||||| || ||||| | | |||||||   | |||||||||||    
T  15863838 atggcagggcgtgggtgtggagacgtcgtttgtttgtttcgaaggaggagagtgtgagggagtgt 15863902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 47746925 - 47746868
Alignment:
Q  19 tgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacg 76  Q
    |||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  47746925 tgagggatatggagagtcgtgggtgggggttcgatggtagggcgtgggtgtggagacg 47746868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 47746829 - 47746727
Alignment:
Q  143 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatg 242  Q
    |||||| |||||||| | ||||||||||||| || || ||||||||||||| |||||| ||| |||||| || |||||| ||| ||||| ||| ||| ||    
T  47746829 gcaggacactgttcaagtcaaatggcggtggttgctaaatcccattcatggctactcgttgaagggagcttatacctttctgacaagcactggcgctttg 47746730  T
Q  243 gtg 245  Q
    |||    
T  47746729 gtg 47746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 8753935 - 8753882
Alignment:
Q  62 gtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtg 115  Q
    ||||||||||||||||||| | || || ||||||||||||  ||||||||||||    
T  8753935 gtgggtgtggagacgtcgactgttagtctgggaggaggatagtttgagggagtg 8753882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 265
Target Start/End: Complemental strand, 40366599 - 40366377
Alignment:
Q  43 gggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnn 142  Q
    ||||| |||||||  ||||||||| |||||||||| |  | ||||  |||||| |||| | | ||||||| |||||  ||||| || ||||||           
T  40366599 ggggggttgatggaggggcgtgggagtggagacgtgggctgtttgcctgggagaaggagtgtgtgagggaatgttccttgttactacataacattatttt 40366500  T
Q  143 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatg 242  Q
    |||||| |||||||  || |  ||||||||| || |||||||||||||||||||| |||||| |||||| |   |||||||||  |||| ||| | ||||    
T  40366499 gcaggatactgttccagatacttggcggtggttgctagatcccattcatggttacacggtgaagggagcatcttcctttttgactagcactggcgatatg 40366400  T
Q  243 gtgaacaggtctagtgttgatga 265  Q
    ||| ||||||| | |||||||||    
T  40366399 gtggacaggtccaatgttgatga 40366377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 210
Target Start/End: Complemental strand, 40369043 - 40368891
Alignment:
Q  58 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttca 157  Q
    |||| ||||| |||||||||||  | |||| |||||||||||| ||| ||||||||||| || || ||||| ||||||       ||||||  |||||||    
T  40369043 gggcatgggtatggagacgtcgtctgtttgcgtgggaggaggaatctgtgagggagtgtcctttgctattacataacattgttttgcaggattctgttca 40368944  T
Q  158 tgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggag 210  Q
    ||| |  |||| |||| ||||||| ||| ||||||| ||| |||| |||||||    
T  40368943 tgatacttggcagtggttgttagaccccgttcatgggtacacggttaggggag 40368891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 34116101 - 34116147
Alignment:
Q  165 tggcggtggctgttagatcccattcatggttactcggtgaggggagc 211  Q
    ||||| ||| |||||||||| ||||| ||||||||||||||||||||    
T  34116101 tggcgttggttgttagatcctattcagggttactcggtgaggggagc 34116147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 19249215 - 19249147
Alignment:
Q  143 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagc 211  Q
    |||||||| |||||||||    ||||| |||||||||||||| ||||| |||||| |||||||||||||    
T  19249215 gcaggaaaatgttcatgatgcttggcgttggctgttagatcctattcagggttacacggtgaggggagc 19249147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University