View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3946_high_6 (Length: 267)

Name: NF3946_high_6

Description: NF3946

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3946_high_6

[»] chr4 (3 HSPs)

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 57; E-Value: 7e-24

Query Start/End: Original strand, 92 - 166

Target Start/End: Original strand, 53350424 - 53350495

Alignment:

Q	92	agctaggaacttttttcttggaggggctgaaaaatatacaatatgtgaacaataatttttcaaatttgagtaatt	166	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53350424	agctaggaactttttccttggaggggctgaaaaatatacaatatgtgaac---aatttttcaaatttgagtaatt	53350495	T

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Target: chr4; HSP #2

Raw Score: 46; E-Value: 3e-17

Query Start/End: Original strand, 12 - 93

Target Start/End: Original strand, 53350291 - 53350372

Alignment:

Q	12	acagacacaatgagcagggcaaggactcaaaacaaaaacaagagttcaaagagaacaatggcaaaagctaagaacatgaaag	93	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	53350291	acagacacaacgagcagaggagggactcaaaacagaaacaagagttcaaagagaacaatagcaaaatgcaagaacatgaaag	53350372	T

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Target: chr4; HSP #3

Raw Score: 32; E-Value: 0.000000006

Query Start/End: Original strand, 187 - 249

Target Start/End: Original strand, 53350590 - 53350650

Alignment:

Q	187	atacatcagttttgtcatattctgtcctatatatagttacctccaaacaaatgttagaaggat	249	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53350590	atacatcagttttgtcacactctgtcctgtata--gttacctccaaaataatgttagaaggat	53350650	T

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