View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3946_high_7 (Length: 251)
Name: NF3946_high_7
Description: NF3946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3946_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 34747934 - 34748176
Alignment:
| Q |
9 |
tagcaaagggaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggt |
108 |
Q |
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| T |
34747934 |
tagcaaagagaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacaatatacaaaaagagagtccaaatgctgaggt |
34748033 |
T |
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| Q |
109 |
tattctgttggagattgatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagtt |
208 |
Q |
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| T |
34748034 |
tattctgttggagattgatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagtt |
34748133 |
T |
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| Q |
209 |
ttgtcatcatattgctccaccttttcattttataataattaac |
251 |
Q |
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| T |
34748134 |
ttgtcatcatattgctccaccttttcattttataataattaac |
34748176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 7970911 - 7970679
Alignment:
| Q |
9 |
tagcaaagggaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggt |
108 |
Q |
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| T |
7970911 |
tagcaaagagaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgaga--caatatacaaaaagagagtccaaatgctgaggt |
7970814 |
T |
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| Q |
109 |
tattctgttggagattgatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagtt |
208 |
Q |
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| T |
7970813 |
tattctgttggaaattggtcttagctccttttcttctgtataaagattttgttctgattttttagctttagatcttccgcttaatattctaatgtaagtt |
7970714 |
T |
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| Q |
209 |
ttgtcatcatattgctccaccttttcattttataa |
243 |
Q |
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| T |
7970713 |
ctgtcatcatattgttctactttttcattttataa |
7970679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 43689455 - 43689644
Alignment:
| Q |
18 |
gaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggttattctgtt |
117 |
Q |
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| T |
43689455 |
gaggagtaagagttgtggttggtgccagagacatgaaaaaggctatgaaagtgaaagaaaaaatccaagaggagagtccttatgctgaggttattctatt |
43689554 |
T |
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| Q |
118 |
ggagattgatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagt |
207 |
Q |
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| T |
43689555 |
ggagattgatcttagctctcttgcttctgtacaaagattttgttcagagtttttagctttagaattgccccttaatattctcatgtaagt |
43689644 |
T |
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