View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3946_high_9 (Length: 246)

Name: NF3946_high_9
Description: NF3946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3946_high_9
NF3946_high_9
[»] chr5 (4 HSPs)
chr5 (1-228)||(3181264-3181491)
chr5 (109-141)||(20301089-20301121)
chr5 (109-141)||(20305502-20305534)
chr5 (109-141)||(20309906-20309938)
[»] chr1 (4 HSPs)
chr1 (88-154)||(23896522-23896588)
chr1 (88-147)||(24246880-24246939)
chr1 (94-135)||(24243248-24243289)
chr1 (94-141)||(24222355-24222402)
[»] chr7 (2 HSPs)
chr7 (94-149)||(1421544-1421599)
chr7 (14-57)||(27755414-27755457)
[»] chr2 (2 HSPs)
chr2 (97-155)||(7169075-7169133)
chr2 (11-72)||(7168968-7169029)
[»] chr3 (4 HSPs)
chr3 (95-148)||(7398538-7398591)
chr3 (94-153)||(2462896-2462955)
chr3 (103-143)||(7443335-7443375)
chr3 (23-63)||(9608640-9608680)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3181491 - 3181264
Alignment:
Q  1 catcaaagacggaaaatcctcaatccttctccaataatcagtacctaaagtataaacactaacctcagttttacaagcatttacattatagcgaaaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3181491 catcaaagacggaaaatcctcaatccttctccaataatcagtacctaaagtataaacactaacctcagttttacaagcatttacattatagcgaaaaaca 3181392  T
Q  101 gaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagtgtttccatcagaatctccttctttaggagtatctaaagcgggtaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3181391 gaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagtgtttccatcagaatctccttctttaggagtatctaaagcgggtaatt 3181292  T
Q  201 gcttcaatattctcatggaagggttcca 228  Q
    ||||||||||||||||||||||||||||    
T  3181291 gcttcaatattctcatggaagggttcca 3181264  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 20301121 - 20301089
Alignment:
Q  109 cttataattatcaatgaaaggatcataaccaaa 141  Q
    ||||||||||||||||||||||||||| |||||    
T  20301121 cttataattatcaatgaaaggatcatacccaaa 20301089  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 20305534 - 20305502
Alignment:
Q  109 cttataattatcaatgaaaggatcataaccaaa 141  Q
    ||||||||||||||||||||||||||| |||||    
T  20305534 cttataattatcaatgaaaggatcatacccaaa 20305502  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 20309938 - 20309906
Alignment:
Q  109 cttataattatcaatgaaaggatcataaccaaa 141  Q
    ||||||||||||||||||||||||||| |||||    
T  20309938 cttataattatcaatgaaaggatcatacccaaa 20309906  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 23896522 - 23896588
Alignment:
Q  88 atagcgaaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagtg 154  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||| |||||    
T  23896522 atagcaaaaaacagaaacaaccttgtaattatgaatgaaaggatcatagccaaaagcatatctagtg 23896588  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 24246880 - 24246939
Alignment:
Q  88 atagcgaaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccata 147  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||    
T  24246880 atagcaaaaaacagaaacaatcttgtaattatcaatgaaaggatcatagccaaaagcata 24246939  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 24243248 - 24243289
Alignment:
Q  94 aaaaacagaaacaaccttataattatcaatgaaaggatcata 135  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  24243248 aaaaacagaaacaaccttgtaattatcaatgaaagggtcata 24243289  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 24222355 - 24222402
Alignment:
Q  94 aaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaa 141  Q
    |||||||||||||||||| |||||||| |||||| |||| ||||||||    
T  24222355 aaaaacagaaacaaccttgtaattatcgatgaaacgatcgtaaccaaa 24222402  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 1421544 - 1421599
Alignment:
Q  94 aaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatata 149  Q
    |||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  1421544 aaaaacagcaacaaccttgtaattatcaatgaaaggatcatatccaaaagcatata 1421599  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 27755457 - 27755414
Alignment:
Q  14 aaatcctcaatccttctccaataatcagtacctaaagtataaac 57  Q
    |||||||  ||||||||| |||||||||||||||||||||||||    
T  27755457 aaatcctttatccttctcgaataatcagtacctaaagtataaac 27755414  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 7169075 - 7169133
Alignment:
Q  97 aacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagtgt 155  Q
    ||||| ||||||||| ||| ||||| ||||| |||||||||||||||||||||| ||||    
T  7169075 aacagcaacaaccttgtaagtatcattgaaatgatcataaccaaaaccatatattgtgt 7169133  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 7168968 - 7169029
Alignment:
Q  11 ggaaaatcctcaatccttctccaataatcagtacctaaagtataaacactaacctcagtttt 72  Q
    |||||||||| |||||||||||||||||| || || |||||||| ||  |||| ||||||||    
T  7168968 ggaaaatcctgaatccttctccaataatcggtgcccaaagtatagaccttaacttcagtttt 7169029  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 7398538 - 7398591
Alignment:
Q  95 aaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatat 148  Q
    ||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||    
T  7398538 aaaacagcaaccaccttataattatcagttaaaggaacataaccaaaaccatat 7398591  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 2462955 - 2462896
Alignment:
Q  94 aaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagt 153  Q
    |||||||| ||| |||||||||||| || | |||||| ||||||||||||||||| ||||    
T  2462955 aaaaacagtaacgaccttataattaccagttaaaggaacataaccaaaaccatatgtagt 2462896  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 7443335 - 7443375
Alignment:
Q  103 aacaaccttataattatcaatgaaaggatcataaccaaaac 143  Q
    |||||| |||||||||||||||||| ||||||| |||||||    
T  7443335 aacaactttataattatcaatgaaatgatcatacccaaaac 7443375  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 9608640 - 9608680
Alignment:
Q  23 atccttctccaataatcagtacctaaagtataaacactaac 63  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  9608640 atccttctccaataatcagtgcccaaagtatgaacactaac 9608680  T

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