View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3946_low_6 (Length: 267)
Name: NF3946_low_6
Description: NF3946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3946_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 53350424 - 53350495
Alignment:
| Q |
92 |
agctaggaacttttttcttggaggggctgaaaaatatacaatatgtgaacaataatttttcaaatttgagtaatt |
166 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53350424 |
agctaggaactttttccttggaggggctgaaaaatatacaatatgtgaac---aatttttcaaatttgagtaatt |
53350495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 53350291 - 53350372
Alignment:
| Q |
12 |
acagacacaatgagcagggcaaggactcaaaacaaaaacaagagttcaaagagaacaatggcaaaagctaagaacatgaaag |
93 |
Q |
| |
|
|||||||||| |||||| | | |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
53350291 |
acagacacaacgagcagaggagggactcaaaacagaaacaagagttcaaagagaacaatagcaaaatgcaagaacatgaaag |
53350372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 53350590 - 53350650
Alignment:
| Q |
187 |
atacatcagttttgtcatattctgtcctatatatagttacctccaaacaaatgttagaaggat |
249 |
Q |
| |
|
||||||||||||||||| | |||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
53350590 |
atacatcagttttgtcacactctgtcctgtata--gttacctccaaaataatgttagaaggat |
53350650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University