View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3947_high_4 (Length: 303)
Name: NF3947_high_4
Description: NF3947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3947_high_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 39475964 - 39476243
Alignment:
| Q |
17 |
acgaggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39475964 |
acgaggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggagtcgtttttcatgagacttgc |
39476063 |
T |
|
| Q |
117 |
aagaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39476064 |
aagaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggat |
39476163 |
T |
|
| Q |
217 |
atactgatatatccggtgggacctttattaaaccttgagcccaaaacaaagggcactgttgacgctgattctgatgatgt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39476164 |
atactgatatatccggtgggacctttattaaaccttgagcccaaaacaaagggcactgttgacgctgattctgatgatgt |
39476243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 39483717 - 39483992
Alignment:
| Q |
19 |
gaggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaa |
118 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| ||||||| || ||||||| | |||| ||| |||| | ||||||||||| ||||||| |
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| T |
39483717 |
gaggcagccatcccgagttttgccaaccccattccttcaaatccattgcctagctttgtgcgaaacaaagaacgggagccatttttcatgagccttgcaa |
39483816 |
T |
|
| Q |
119 |
gaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
39483817 |
gaggcctcaagaaagtaaatggcattatagtaaattcattttaagagctagaatctcacgcggttcactcttttttcactcatccagatctatcggatat |
39483916 |
T |
|
| Q |
219 |
actgatatatccggtgggacctttattaaaccttgagcccaaaacaaagggcactgttgacgctgattctgatgat |
294 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39483917 |
acagatatatccggtgggacctttattaaaccctgagcctaaaacaaagggcactgttgacgctgattctgatgat |
39483992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 39486923 - 39487178
Alignment:
| Q |
17 |
acgaggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgc |
116 |
Q |
| |
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|||||||||||||||| ||||| |||||| | |||| || || ||||||||||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
39486923 |
acgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgc |
39487022 |
T |
|
| Q |
117 |
aagaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggat |
216 |
Q |
| |
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| ||| |||| |||| ||||| |||||||||||| |||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||| | || |
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| T |
39487023 |
cggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaa |
39487122 |
T |
|
| Q |
217 |
atactgatatatccggtgggacctttattaaaccttgagcccaaaacaaagggcac |
272 |
Q |
| |
|
||| | ||||||| |||||||| |||||||||| ||||||||||| |||||||| |
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|
| T |
39487123 |
ttaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcac |
39487178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 39464260 - 39464021
Alignment:
| Q |
29 |
tcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaa |
128 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||| ||||||||| || ||| |||||||| || |||||||||||||| ||||| ||||||||| |
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|
| T |
39464260 |
tcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgcagtaatacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaa |
39464161 |
T |
|
| Q |
129 |
gaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatatactgatatat |
228 |
Q |
| |
|
||| | |||| |||||||||| |||||||||||||||||||| ||||| ||||| || ||||| ||| || || |||| | | | ||| ||||||| |
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| T |
39464160 |
gaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcatttttatctgatactattctagctggtttacggatatat |
39464061 |
T |
|
| Q |
229 |
ccggtgggacctttattaaaccttgagcccaaaacaaagg |
268 |
Q |
| |
|
|| |||||||| ||||||||| ||||||||||| |||| |
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| T |
39464060 |
cctgtgggacccatattaaacccagagcccaaaaccaagg |
39464021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 39460765 - 39460898
Alignment:
| Q |
77 |
tgctacacaaggaatgggaatcgtttttcatgagact-tgcaagaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcac |
175 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||| ||| ||| | ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| | |
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|
| T |
39460765 |
tgctaaacaaggaatgggaatccttttttatga-actatgctggtggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatccc |
39460863 |
T |
|
| Q |
176 |
atgcggttcactcttttttctctcatcctgatcta |
210 |
Q |
| |
|
|||| ||||| || ||||||||||| ||||||||| |
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| T |
39460864 |
atgcagttcaatcatttttctctcaccctgatcta |
39460898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 263
Target Start/End: Complemental strand, 39457992 - 39457764
Alignment:
| Q |
35 |
gtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagt |
134 |
Q |
| |
|
||||||| ||| | ||||||||||| | |||||||||| ||||||| |||||||||||| || || |||||||| ||| | ||| |||||||| | |
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|
| T |
39457992 |
gtttcgctaactcagttccttcaaacactttgcccagttcagtgctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgc |
39457893 |
T |
|
| Q |
135 |
aaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatatactgatatatccggtg |
234 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||||||| |||| |||||||| ||| ||||||||||||||||| | | | ||| ||||||||||| |
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|
| T |
39457892 |
tgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctctcatcctgatctagcaggtttacccatatatccggta |
39457793 |
T |
|
| Q |
235 |
ggacctttattaaaccttgagcccaaaac |
263 |
Q |
| |
|
||||| ||||||||| |||||||||| |
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|
| T |
39457792 |
ggaccaatattaaaccccaagcccaaaac |
39457764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 278
Target Start/End: Complemental strand, 39470441 - 39470213
Alignment:
| Q |
50 |
ttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattatagt |
149 |
Q |
| |
|
|||||| ||| || |||||||||| |||||||||||||||| |||| | |||||||| | || | |||||||||||| | |||||||||| || |
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|
| T |
39470441 |
ttcctttaaactcgttgcccagttcagtgctacacaaggaatacaaatccgtcttcatgagcttcgccaaaggcctcaagaatgccgatggcattattgt |
39470342 |
T |
|
| Q |
150 |
aaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatatactgatatatccggtgggacctttattaaac |
249 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| |||||||||||||| || ||| | | | || |||||||| | ||||| |||||||| |
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|
| T |
39470341 |
caattcatttgaagagctagaatcctatgcggttcactcctttttctctcatcccgaactagctggtttatccatatatccaataggacccatattaaac |
39470242 |
T |
|
| Q |
250 |
cttgagcccaaaacaaagggcactgttga |
278 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| |
|
|
| T |
39470241 |
ctagagcccaaaaccaagggcaccgttga |
39470213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 39451525 - 39451647
Alignment:
| Q |
84 |
caaggaatgggaatcgtttttcatgagacttgcaaga-ggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggt |
182 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
39451525 |
caaggaatgggaaccgtttttcatgag-cttcatagaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggt |
39451623 |
T |
|
| Q |
183 |
tcactcttttttctctcatcctga |
206 |
Q |
| |
|
|||||| |||||| ||||||||| |
|
|
| T |
39451624 |
tcactcctttttcaatcatcctga |
39451647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 39455118 - 39455274
Alignment:
| Q |
50 |
ttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattatagt |
149 |
Q |
| |
|
|||||||||| |||||||| ||| ||||| |||||||||| || || |||||| ||| |||||||||||||||||| | |||| || ||||| |
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|
| T |
39455118 |
ttccttcaaactcattgccacgttccctgctaagcaaggaatggaaaccggttttcaagagctatgcaagaggcctcaagaatgccgatggaatcatagt |
39455217 |
T |
|
| Q |
150 |
aaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctga |
206 |
Q |
| |
|
||| ||||||||||| || ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
39455218 |
aaattcatttgaagatcttgaatctcatgcggttcactcctttttctctcatcctga |
39455274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 39472591 - 39472749
Alignment:
| Q |
120 |
aggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatata |
219 |
Q |
| |
|
|||||||||||| | ||||| |||||||||| |||||||||||||||||||| || || |||||||| ||| ||| |||||| || | | | | || |
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|
| T |
39472591 |
aggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactcgatttcatctgatcctggtccagctggttta |
39472690 |
T |
|
| Q |
220 |
ctgatatatccggtgggacctttattaaaccttgagcccaaaacaaagggcactgttga |
278 |
Q |
| |
|
| ||||||||||| || || || | ||||| ||||||||||| |||||||| ||||| |
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|
| T |
39472691 |
cctatatatccggtagggcccatactgaacctggagcccaaaaccaagggcaccgttga |
39472749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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