View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3947_low_1 (Length: 627)
Name: NF3947_low_1
Description: NF3947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3947_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 21 - 585
Target Start/End: Original strand, 42754482 - 42755046
Alignment:
| Q |
21 |
aacaactcacataatataagtaaccaaataaataagtctctgcttagataaactatttaatttcgtgcttatagcatatgcgcttatcatataaatgctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754482 |
aacaactcacataatataagtaaccaaataaataagtctctgcttagataaactatttaatttcgtgcttatagcatatgcgcttatcatataaatgctt |
42754581 |
T |
|
| Q |
121 |
acatataagctatcactaacaaaacattgagaaaaataaacaaacaatggtgaagtatagatagaagaagagtgaggacctgaaccaccgagggaagaag |
220 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42754582 |
acatataagctatctctaacaaaacattgagaaaaataaacaaacaatggtgaagtatagatagaagaagagtgaggacctgaaccaccgagggaagagg |
42754681 |
T |
|
| Q |
221 |
aagcagaagcaatgaaggtattgttaagagaagcataatttggaagccatgaagaagcaaatatcatgaaccttgaaggacgcttattacatgaatgtgt |
320 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42754682 |
aagcagaagcaatgaaggtgttgttaagagaagcataatttggaagccatgaagaagcaaatatcatgaaccgtgaaggacgcttattacatgaatgtgt |
42754781 |
T |
|
| Q |
321 |
agagctatggggtgtagtagaagtaggaggggtgagacccaattgtccacaattcagatagattctcttcattctctcaaattgtttttcaccttctctt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754782 |
agagctatggggtgtagtagaagtaggaggggtgagacccaattgtccacaattcagatagattctcttcattctctcaaattgtttttcaccttctctt |
42754881 |
T |
|
| Q |
421 |
atcttcttaagctcaatgctccattaactctcattcagtaccttcacttgtccaaacggataaactggttttaagtgtacaaaaatatatatacgagttt |
520 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
42754882 |
atctgcttaagctcaatgctccattaactctcattcagtaccttcacttgtccaaacggataaactggttttaagtgtagagaaatatatatacgagttt |
42754981 |
T |
|
| Q |
521 |
ggtccttctcaattttcttgtgacacaatttaatctcttgatatgagagattaatttggatatta |
585 |
Q |
| |
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| T |
42754982 |
ggtccttctcaattttctcgtcacacaatttaatctcttgatatgagagattaatttggatatta |
42755046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 22684680 - 22684633
Alignment:
| Q |
86 |
tgcttatagcatatgcgcttatcatataaatgcttacatataagctat |
133 |
Q |
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| T |
22684680 |
tgcttataccatatgcgcttatcatataaatgcttctgtataagctat |
22684633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 741051 - 740985
Alignment:
| Q |
67 |
gataaactatttaatttcgtgcttatagcatatgcgcttatcatataaatgcttacatataagctat |
133 |
Q |
| |
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| T |
741051 |
gataaacaatttaattacgtgcctgtagcagaagcgtttatcatataaatgcttatgtataagctat |
740985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 26516205 - 26516251
Alignment:
| Q |
87 |
gcttatagcatatgcgcttatcatataaatgcttacatataagctat |
133 |
Q |
| |
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| T |
26516205 |
gcttatagcataagcgcttatcatataagtgcttatgtataagctat |
26516251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 20982300 - 20982252
Alignment:
| Q |
85 |
gtgcttatagcatatgcgcttatcatataaatgcttacatataagctat |
133 |
Q |
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|||||||||||||| | ||||||||||||| |||||| |||||||||| |
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| T |
20982300 |
gtgcttatagcataagtgcttatcatataagtgcttatgtataagctat |
20982252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 34788577 - 34788544
Alignment:
| Q |
100 |
gcgcttatcatataaatgcttacatataagctat |
133 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |
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| T |
34788577 |
gcgcttatcatataaatgcttacgtataagctat |
34788544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 28769500 - 28769456
Alignment:
| Q |
89 |
ttatagcatatgcgcttatcatataaatgcttacatataagctat |
133 |
Q |
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|||||||||| | |||||||||||||||||||| |||||||||| |
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| T |
28769500 |
ttatagcataagtgcttatcatataaatgcttatgtataagctat |
28769456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 31875720 - 31875676
Alignment:
| Q |
89 |
ttatagcatatgcgcttatcatataaatgcttacatataagctat |
133 |
Q |
| |
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|||||||||| ||||||||||||||| |||||| |||||||||| |
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|
| T |
31875720 |
ttatagcataagcgcttatcatataagtgcttatctataagctat |
31875676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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