View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3947_low_2 (Length: 496)
Name: NF3947_low_2
Description: NF3947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3947_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 42 - 480
Target Start/End: Complemental strand, 11308196 - 11307758
Alignment:
| Q |
42 |
cttagctgttagttaggacaacgcataaaatatgcaaagtacgaggttcaaatctcgaacacttaaaatattctgcatgaactacgacgactgaaaacaa |
141 |
Q |
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| T |
11308196 |
cttagctgttagttaggacaacgcataaaatatgcaaagtacgaggtttaaatcccgaacacttaaaatattctgcatgaactacgacgactgaaaacaa |
11308097 |
T |
|
| Q |
142 |
aacccttacaaacagtgaaatgaataagtttagaagattttaccataaacagttttggtggcgtttcgagaaaaaccaccaataattttttcagtatcag |
241 |
Q |
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| T |
11308096 |
aacccttacaaacagtgaaatgaataagtttagaagattttaccataaacagttttggtggcgtttcgagaaaaaccaccaataattttttcagtatcag |
11307997 |
T |
|
| Q |
242 |
tgaaggaaacagaagaaagcgttgttcctatgatatctacccgatcatgatcaggcatatatacagcaacacaagaacgggttgttcctaagtcgattcc |
341 |
Q |
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| T |
11307996 |
tgaaggaaacagaagaaagcgttgttcctatgatatctacccgatcatgatcaggcatatatacagcaacacaagaacgggttgttcctaagtcgattcc |
11307897 |
T |
|
| Q |
342 |
gattgcataattctcacaatttcctgtcatttcttaaccnnnnnnncgatgaatataagagtttgagaatttagtacttagtttgtgaatgttttggttt |
441 |
Q |
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| T |
11307896 |
gattgcataattctcacaatttcctgtcatttcttaacctttttttcgatgaatataagagtttgagaatttagtacttagtttgtgaatgttttggttt |
11307797 |
T |
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| Q |
442 |
aactttgatagttatagtatcagcaagctatgtgtttat |
480 |
Q |
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| T |
11307796 |
aactttgatagttatagtatcagcaagctatgtgtttat |
11307758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 11159756 - 11159829
Alignment:
| Q |
302 |
atacagcaacacaagaacgggttgttcctaagtcgattccgattgcataattctcacaatttcctgtcatttct |
375 |
Q |
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| T |
11159756 |
atacagcaacacaagaataggttgttcctaggtcgattcctattgcaactttctcactttttactgtcatttct |
11159829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 11198308 - 11198381
Alignment:
| Q |
302 |
atacagcaacacaagaacgggttgttcctaagtcgattccgattgcataattctcacaatttcctgtcatttct |
375 |
Q |
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| T |
11198308 |
atacagcaacacaagaataggttgttcctaggtcgattcctattgcaactttctcaccttttactgtcatttct |
11198381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 16125063 - 16125023
Alignment:
| Q |
59 |
acaacgcataaaatatgcaaagtacgaggttcaaatctcga |
99 |
Q |
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| T |
16125063 |
acaatgcataatatatgcaaagtccgaggttcaaatctcga |
16125023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 744537 - 744592
Alignment:
| Q |
49 |
gttagttaggacaacgcataaaatatgcaaagtacgaggttcaaatctcgaacact |
104 |
Q |
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| T |
744537 |
gttagttaggacaatgcataaaatatgcaaggtatgaggttcaaacctcggacact |
744592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 39054014 - 39054055
Alignment:
| Q |
56 |
aggacaacgcataaaatatgcaaagtacgaggttcaaatctc |
97 |
Q |
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| T |
39054014 |
aggataacgcataaaatatgcaaagtccgcggttcaaatctc |
39054055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 44406917 - 44406858
Alignment:
| Q |
37 |
gtgagcttagct--gttagttaggacaacgcataaaatatgcaaagtacgaggttcaaat |
94 |
Q |
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|||||||||||| ||| ||| |||||| ||||||||||||||| || |||||||||||| |
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| T |
44406917 |
gtgagcttagctcagttggttgggacaatgcataaaatatgcaaggtccgaggttcaaat |
44406858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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