View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3947_low_3 (Length: 420)
Name: NF3947_low_3
Description: NF3947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3947_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 19467240 - 19467638
Alignment:
| Q |
1 |
tactaccaaaaaagttacaacgcaagaaaagatgatcagccgattcctccataccacacccacctacacacaaaacaaaatttgcttgaataatactatg |
100 |
Q |
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| T |
19467240 |
tactaccgaaaaagttacaacgcaaaaaaagatgatcagccgattcctccataccacactcacctacacacaaaacaaaatttgcttgaataatactatg |
19467339 |
T |
|
| Q |
101 |
tcttagtaaattgtcctttgttgatagaaggttacgaaataagtgccaagtagaaaatgaaacttttaaagaaacatttttatgccgcatattatcaccc |
200 |
Q |
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| T |
19467340 |
tcttagtaaattgtcctttgttggtagaaggttacgaaataagtgccaagcagaaaaccaaacttttaaagaaacatgtttatgccgcatattatcaccc |
19467439 |
T |
|
| Q |
201 |
ataaacgatcaccaaccacatcctctattgtgaaaaatgataaacatctcgagcagaataacctttaattggatctaaaagccatttccacctgtctgat |
300 |
Q |
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| T |
19467440 |
ataaacgatcaccaaccacatcctctattgtaaaaaatgataaacatctcgaacagaataacctttaatcggatctaaaagccatttccacctgcctgat |
19467539 |
T |
|
| Q |
301 |
acgttttcttacaaagcaatattatgaagcacataactacaatctctaacaaggttctcctcctatgtaaacaatctccacctctatttccaagcttcc |
399 |
Q |
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| T |
19467540 |
acgttttcctacaaagcaatattatgaagcacataactacaatctctaacaaggttttcctcatacgcaaacaatctccgcctctatttccaagcttcc |
19467638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 18802528 - 18802657
Alignment:
| Q |
16 |
tacaacgcaagaaaagatgatcagccgattcctccataccacacccacctacacacaaaacaaaatttgcttgaataatactatgtcttagtaaattgtc |
115 |
Q |
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| T |
18802528 |
tacaatgcaagaaaagatgattagccgattcatccatgccacacccacctacacacgttgtgaaacctgcttgaataataccacatcttagtaaattatc |
18802627 |
T |
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| Q |
116 |
ctttgttgatagaaggttacgaaataagtg |
145 |
Q |
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| T |
18802628 |
ctttgttggtagagggttatgaaacaagtg |
18802657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 32408816 - 32408718
Alignment:
| Q |
235 |
aaatgataaacatctcgagcagaataacctttaattggatctaaaagccatttccacctgtctgatacgttttcttacaaagcaatattatgaagcaca |
333 |
Q |
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|||||||||||||| || ||||| ||||||| |||| ||||||||| |||||||| |||||||||||||| |||| |||||||||| |||||| |
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| T |
32408816 |
aaatgataaacatcattggctgaatatcctttaaccggatataaaagccacttccacctatctgatacgttttccagcaaaccaatattatggagcaca |
32408718 |
T |
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