View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3947_low_4 (Length: 419)
Name: NF3947_low_4
Description: NF3947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3947_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 39410342 - 39410733
Alignment:
| Q |
1 |
aattgtgtaatattaattgtactacgtcacgagaatggaagaacgttatgagattattaaaggtattgggtcaggaaattttggggtagcaaagcttgta |
100 |
Q |
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| T |
39410342 |
aattgtgtaatattaattgtactacgtcacgagaatggaagaacgttatgagattattaaaggtattgggtcaggaaattttggggtagcaaagcttgta |
39410441 |
T |
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| Q |
101 |
agggagagacaaagtggtaaactatatgctgtcaaaatcattgagagaggccttaaggtttgtgctcttgtttttaacttcatctctttgcttatatatg |
200 |
Q |
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| T |
39410442 |
agggagagacaaagtggtaaactatatgctgtcaaaatcattgagagaggccttaaggtttgtgctcttgtttttaacttcatctctttgcttatatatg |
39410541 |
T |
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| Q |
201 |
catgttgtctttgtcttaggcctataaagtatgttacctcgtactttggttggtcttacgttgattggttagtaacttcatgtgactgaattcaatgttt |
300 |
Q |
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| T |
39410542 |
catgttgtctttgtcttaggcctataaagtatgttacctcgtactttggttggtcttacgttgattggttagtaacttcatgtgactgaattcaatgttt |
39410641 |
T |
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| Q |
301 |
catgttgcagattgatgagcatgttcaaagggagattataaatcataggtccttgaagcatcccaatatcattagatttaaagaggtaataa |
392 |
Q |
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| T |
39410642 |
catgttgcagattgatgagcatgttcaaagggagattataaatcataggtccttgaagcatcccaatatcattagatttaaagaggtaataa |
39410733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 37601865 - 37601944
Alignment:
| Q |
309 |
agattgatgagcatgttcaaagggagattataaatcataggtccttgaagcatcccaatatcattagatttaaagaggta |
388 |
Q |
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| T |
37601865 |
agattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggta |
37601944 |
T |
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