View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3947_low_6 (Length: 284)
Name: NF3947_low_6
Description: NF3947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3947_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 11035406 - 11035547
Alignment:
| Q |
139 |
atcatcatcatgtcagtatacgatgcagcattcatcgacacacaactctccnnnnnnncatcaatcttcggtctccgtctcagggttgtcatcggaatcc |
238 |
Q |
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| T |
11035406 |
atcatcgtcatgtcagtatacgatgcagcattcatcgacacacaactatccaaaaaaacatcaatcttcggtctccgtctctgggttgtcatcggaatcc |
11035505 |
T |
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| Q |
239 |
tcgtcggttctctcatcgtcttaactctctttcttctctctc |
280 |
Q |
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| T |
11035506 |
tcgtcggttctcttatcgtcttaactctcttccttctctctc |
11035547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 11035298 - 11035347
Alignment:
| Q |
21 |
cactcactcacattctctttccacaccaaatccaatgccaccaatttcct |
70 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11035298 |
cactcactcaaattctctttccacaccaaatccaatgccaccaatttcct |
11035347 |
T |
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