View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3947_low_8 (Length: 238)
Name: NF3947_low_8
Description: NF3947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3947_low_8 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 3418078 - 3418299
Alignment:
| Q |
17 |
atgtgttgataccaatggattattaagatgaaacggagggaggcacatgtatttagaaaagcaaaatcagccctatcttgattgatttatgaatttattc |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3418078 |
atgtgttgatacgaatggattattaagatgaaacggaggtaggcacatgtatttagaaaagcaaaatcagccctatcttgattgatttatgaatttattc |
3418177 |
T |
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| Q |
117 |
tttcagcggcatcgtgatttctagaaaattggaaacatgttcatatcaaacttatgagttttgataaaattgaaccctgtaacctatattgaattgctta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3418178 |
tttcagcggcatcgtgatttctagaaaattggaaacatgttcatatcaaacttatgagttttgataaaattgaaccctgtaacctagattgaattgctta |
3418277 |
T |
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| Q |
217 |
cagaaaaatcgagatttgttct |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
3418278 |
cagaaaaatcgagatttgttct |
3418299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 19068028 - 19067807
Alignment:
| Q |
17 |
atgtgttgataccaatggattattaagatgaaacggagggaggcacatgtatttagaaaagcaaaatcagccctatcttgattgatttatgaatttattc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19068028 |
atgtgttgataccaatggattattaagatgaaacggaggtagacacatgtatttagaaaagcaaaatcagctctatcttgattgatttatgaatttattc |
19067929 |
T |
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| Q |
117 |
tttcagcggcatcgtgatttctagaaaattggaaacatgttcatatcaaacttatgagttttgataaaattgaaccctgtaacctatattgaattgctta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
19067928 |
tttcagcggcatcgtgatttctagaaaattggaaacatgttcatatcaaacttatgagttttgataaaattgaaccctgtaacctagattaaattgctta |
19067829 |
T |
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| Q |
217 |
cagaaaaatcgagatttgttct |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
19067828 |
cagaaaaatcgagatttgttct |
19067807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 34308895 - 34309112
Alignment:
| Q |
21 |
gttgataccaatggattattaagatgaaacggagggaggcacatgtatttagaaaagcaaaatcagccctatcttgattgatttatgaatttattctttc |
120 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
34308895 |
gttgataccaatggattattaagatgaaacggaggtaggcacatgtatttagaaaagcaaaatcagctctatcttaattgatttatgaatttattctttc |
34308994 |
T |
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| Q |
121 |
agcggcatcgtgatttctagaaaattggaaacatgttcatatcaaacttatgagttttgataaaattgaaccctgtaacctatattgaattgcttacaga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
34308995 |
agcggcatcgtgatttctagaaaattggaaacatgttcatatcaaacttatgagttttaataaaattgaaccctgtaacctagattaaattgcttacaga |
34309094 |
T |
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| Q |
221 |
aaaatcgagatttgttct |
238 |
Q |
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|||||| ||||||||||| |
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| T |
34309095 |
aaaatcaagatttgttct |
34309112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 49090267 - 49090488
Alignment:
| Q |
17 |
atgtgttgataccaatggattattaagatgaaacggagggaggcacatgtatttagaaaagcaaaatcagccctatcttgattgatttatgaatttattc |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49090267 |
atgtgttgatatcaatggattattaagatgaaacggaggtaggcacatgtatttagaaaagcaaaatcagccctatcttgattgatttatgaatttattc |
49090366 |
T |
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| Q |
117 |
tttcagcggcatcgtgatttctagaaaattggaaacatgttcatatcaaacttatgagttttgataaaattgaaccctgtaacctatattgaattgctta |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| || |||||||||| |
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| T |
49090367 |
tttcagcggcatcatgatttctagaaaattggaaacatgttcgtatcaaatttatgagttttgataaaattgaaccttgtaacctagatcgaattgctta |
49090466 |
T |
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| Q |
217 |
cagaaaaatcgagatttgttct |
238 |
Q |
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|||||||||| | ||||||||| |
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| T |
49090467 |
cagaaaaatccaaatttgttct |
49090488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 46917643 - 46917727
Alignment:
| Q |
67 |
atttagaaaagcaaaatcagccctatctt-gattgatttatgaatttattctttcagcggcatcgtgatttctagaaaattggaaac |
152 |
Q |
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|||||||||||||||||| || |||||| ||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||| |
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| T |
46917643 |
atttagaaaagcaaaatcggca-tatctttgattgatttatgaatttatgttttca-cagcatcatgatttctagaaaattggaaac |
46917727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 4085576 - 4085669
Alignment:
| Q |
17 |
atgtgttgataccaatggattattaagatgaaacggagggaggcacatgtatttagaaaagcaaaatcagccctatcttgattgatttatgaat |
110 |
Q |
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| T |
4085576 |
atgtgttgataccaatggattattaagatgaaacggaggtaggcacatgtatttagaaaagcaaaatcagccctatcttgattgatttatgaat |
4085669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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