View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3948_high_1 (Length: 481)
Name: NF3948_high_1
Description: NF3948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3948_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 274 - 474
Target Start/End: Original strand, 42409095 - 42409295
Alignment:
| Q |
274 |
catgatgcagttgttgctgatgtggctaccgagactgcaaagtacttgtttccgaaaagatttgaaagccgcactctcgaagaagctttgatgacaggtg |
373 |
Q |
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| T |
42409095 |
catgatgcagttgttgctgatgtggctaccgagactgcaaagtacttgtttccgaaaagatttgaaagccgcactctcgaagaagctttgatgacaggtg |
42409194 |
T |
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| Q |
374 |
cttcattttccttctcaattatgcaacaaattttgattattatcgtatagaatctgttttcttaattaattgaatttaattattttggtgcttgaccttt |
473 |
Q |
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| T |
42409195 |
cttcattttccttctcaattatgcaacaaattttgattattatcgtatagaatctgttttcttaattaattgaatttaattattttggtgcttgaccttt |
42409294 |
T |
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| Q |
474 |
g |
474 |
Q |
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| T |
42409295 |
g |
42409295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 42408837 - 42409029
Alignment:
| Q |
16 |
acccttctctttctatacaatcagccccaatttctgtaaaacctaacaaaacaattatctctatcaccaactctgcatcttccaacaatagagtaagcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42408837 |
acccttctctttctatacaatcagccccaatttctgtaaaacctaacaaaacaattatctctatcaccaactctgcatcttccaacaatagagtaagcac |
42408936 |
T |
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| Q |
116 |
ccaacgaagaaccatatcagcatttgaagctcgaatctcactcattttcgctctcgcttctcaatccgcctctctatcccagcgacgtaaatg |
208 |
Q |
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| T |
42408937 |
ccaacgaagaaccatatcagcatttgaagctcgaatctcactcattttcgctctcgcttctcaatccttctctctatcccagcgacgtaaatg |
42409029 |
T |
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