View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3948_high_13 (Length: 239)
Name: NF3948_high_13
Description: NF3948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3948_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47063857 - 47063636
Alignment:
| Q |
1 |
ttccgataatgtaattactcaaaatgcaaaacaaaaaactcaaacatcgagagtaccataccaaatcagctacga-aggaaagagtgctttggaaatacc |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47063857 |
ttccgacaatgtaattactcaaaatgcaaaacaaaaaaatcaaacatcgagagtaccagaccaaatcagctacggtaggaaagagtgctttggaaatacc |
47063758 |
T |
|
| Q |
100 |
ctgtaaatgatttgcattaaggacattttgtaagaggaggtaaagaataacccaaaaaatatagtagtaaagaagaaaataagcagacatatttgtgctt |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47063757 |
ctgtaaatgatttacattaaggacattttgtaagaggaggtaaagaataacccaaaaaatatagtagtaaagaagaaaataagcaggcatatttgtgctt |
47063658 |
T |
|
| Q |
200 |
gagcatgtgcgaacagtgtcag |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47063657 |
gagcatgtgcgaacagtgtcag |
47063636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 47062165 - 47062015
Alignment:
| Q |
8 |
aatgtaattactcaaaatgcaaaacaaaaaactcaaacatcgagagtaccataccaaatcagctac-gaaggaaagagtgctttggaaataccctgtaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||| |
|
|
| T |
47062165 |
aatgtaattactcaaaatgcaaaacaaaaaactcaaaca--gagagtaccataccaaatcagctacggtaggaaagagtgctttggaaattccctgaaaa |
47062068 |
T |
|
| Q |
107 |
tgatttgcattaaggacattttgtaagaggaggt-aaagaataacccaaaaaat |
159 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
47062067 |
caatttgca-caaggacattctgtaataggaggtaaaaaaataacccaaaaaat |
47062015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University