View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3948_low_1 (Length: 505)

Name: NF3948_low_1
Description: NF3948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3948_low_1
NF3948_low_1
[»] chr3 (4 HSPs)
chr3 (1-492)||(223064-223549)
chr3 (1-147)||(218198-218341)
chr3 (214-368)||(218020-218170)
chr3 (456-495)||(22729954-22729993)
[»] chr4 (2 HSPs)
chr4 (376-492)||(29728744-29728862)
chr4 (453-491)||(38450695-38450733)
[»] chr7 (4 HSPs)
chr7 (382-492)||(32002087-32002199)
chr7 (460-494)||(41437123-41437157)
chr7 (454-492)||(46976970-46977008)
chr7 (460-492)||(33084987-33085019)
[»] chr5 (1 HSPs)
chr5 (212-293)||(29839068-29839150)
[»] chr8 (3 HSPs)
chr8 (376-490)||(26413398-26413513)
chr8 (456-495)||(5589559-5589598)
chr8 (450-491)||(36665306-36665347)
[»] chr2 (4 HSPs)
chr2 (382-490)||(16452169-16452277)
chr2 (460-492)||(10429915-10429947)
chr2 (460-492)||(26849278-26849310)
chr2 (460-492)||(36959382-36959414)
[»] chr1 (2 HSPs)
chr1 (428-492)||(11098944-11099008)
chr1 (440-488)||(43965071-43965119)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 223549 - 223064
Alignment:
Q  1 atgtttatttttgtctctttctttt-gaattgtttttctgcctatatatgtttatgtctcaaatactagtgttttttctggcttgttttgtactattatg 99  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223549 atgtttatttttatctctttctttttgacttgtttttctgcctatatatgtttatgtctcaaatactagtgttttttctggcttgttttgtactattatg 223450  T
Q  100 cattcatgcgtgtatgtcaatcaaatgttattattaattttataaaatgatatttaaatgttcatgtgctacaaagtctctttgtcattgtttttgttct 199  Q
    ||| ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223449 catgcatg--------tcaatcaaatgttattattaattttataaaatgatatttaaatgttcatgtgctacaaagtctctttgtcattgtttttgttct 223358  T
Q  200 tttgtgtctgtttgcatgtcgatcacttgttctgttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtttagttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223357 tttgtgtctgtttgcatgtcgatcacttgttctgttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtttagttt 223258  T
Q  300 agtttatgtttggttcagttttggatgtggcaaaatttattcaagagagatgtgaaattgattttgacannnnnnnaatgataaatgttagtatgttaat 399  Q
    ||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  223257 agtttatgtttggtttagttttggatgtggcaaaatttattc--tagagatgtgaaattgattttgacatttttttaatgataaatgttagtatgttaat 223160  T
Q  400 tgttgtgt---gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaaccagttgagctatccaaccccc 492  Q
    ||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223159 tgttgtgttagtttttttatttccttgtgaggacttgaatcctaggcttccgactacttaactcttagctcaaaccagttgagctatccaaccccc 223064  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 218341 - 218198
Alignment:
Q  1 atgtttatttttgtctctttcttttgaattgtttttctgcctatatatgtttatgtctcaaatactagtg-ttttttctggcttgttttgtactattatg 99  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  218341 atgtttatttttgtctctttcttttgagttgtttttctgcctatatatgtttatgtctcaaatactagtgcttttttctggcttgttttgtactattatg 218242  T
Q  100 cattcatgcgtgtatgtcaatcaaatgttattattaattttataaaat 147  Q
    ||| |||||    |||||||||||||||||||||||||||||||||||    
T  218241 catgcatgc----atgtcaatcaaatgttattattaattttataaaat 218198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 368
Target Start/End: Complemental strand, 218170 - 218020
Alignment:
Q  214 catgtcgatcacttgttctgttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtttagtttagtttatgtttgg- 312  Q
    ||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||||| || ||||| ||   |  |||||||||| |||||||||     
T  218170 catgttgatcacttgttctgtttattgtttctttcattctaaggttgtaaaaattgatttttaatcttttctt---aagttagtttagtgtatgtttggt 218074  T
Q  313 ttcagttttggatgtggcaaaatttattcaagagagatgtgaaattgattttgaca 368  Q
    |||| ||||||||  ||||||||| |||     |||||||||||||||||||||||    
T  218073 ttcacttttggataaggcaaaattgatt--ttggagatgtgaaattgattttgaca 218020  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 495
Target Start/End: Original strand, 22729954 - 22729993
Alignment:
Q  456 aactcttagctcaaaccagttgagctatccaaccccctat 495  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  22729954 aactcttagctcgaaccagttgagctacccaaccccctat 22729993  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 492
Target Start/End: Original strand, 29728744 - 29728862
Alignment:
Q  376 aatgataaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaacca 473  Q
    ||||| || ||||||||||||||||||| |||  ||||||| | |||||   |||||||||| |||  |  ||| ||| |||||| ||||||||||||||    
T  29728744 aatgacaagtgttagtatgttaattgttatgttagttttttttctccttaataggacttgaaccctgaatctccaactccttaacccttagctcaaacca 29728843  T
Q  474 gttgagctatccaaccccc 492  Q
    ||||||||| |||||||||    
T  29728844 gttgagctacccaaccccc 29728862  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 38450733 - 38450695
Alignment:
Q  453 cttaactcttagctcaaaccagttgagctatccaacccc 491  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  38450733 cttaacccttagctcaaaccagttgagctacccaacccc 38450695  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 492
Target Start/End: Original strand, 32002087 - 32002199
Alignment:
Q  382 aaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaaccagttgag 479  Q
    |||||||||||||||||||||| |||  ||| ||| | ||||||  ||||||| || ||| |||  || ||  |||||| ||||||||||||||||||||    
T  32002087 aaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttaaacccttgaccgccaacaccttaacccttagctcaaaccagttgag 32002186  T
Q  480 ctatccaaccccc 492  Q
    ||| |||||||||    
T  32002187 ctaaccaaccccc 32002199  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 41437157 - 41437123
Alignment:
Q  460 cttagctcaaaccagttgagctatccaacccccta 494  Q
    ||||||||||||||||||||||| |||||||||||    
T  41437157 cttagctcaaaccagttgagctacccaacccccta 41437123  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 46976970 - 46977008
Alignment:
Q  454 ttaactcttagctcaaaccagttgagctatccaaccccc 492  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  46976970 ttaacccttagctcaaaccagttgagctacccaaccccc 46977008  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 33084987 - 33085019
Alignment:
Q  460 cttagctcaaaccagttgagctatccaaccccc 492  Q
    ||||||||||||||||||||||| |||||||||    
T  33084987 cttagctcaaaccagttgagctacccaaccccc 33085019  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 29839150 - 29839068
Alignment:
Q  212 tgcatgtcgatcacttgttct-gttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtt 293  Q
    ||||||| ||||||| ||| | ||| ||||||||||| || | |||||||||||||||| ||||||| |||||||| ||||||    
T  29839150 tgcatgttgatcactcgtttttgtttagtgtttcttttatccaaaggttgtaaaaattgtttttgaatcttttattttgagtt 29839068  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 490
Target Start/End: Original strand, 26413398 - 26413513
Alignment:
Q  376 aatgataaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaacca 473  Q
    ||||| |||||||||||||||||||||| |||  | ||||| | |||||   | |||||||||||| ||| ||| |||  | |||||||| |||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgttagcttttt-tctcctttccaagacttgaatcctggacatccaactcatgaactcttacctcaaacca 26413496  T
Q  474 gttgagctatccaaccc 490  Q
    ||||||||| |||||||    
T  26413497 gttgagctacccaaccc 26413513  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 495
Target Start/End: Complemental strand, 5589598 - 5589559
Alignment:
Q  456 aactcttagctcaaaccagttgagctatccaaccccctat 495  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  5589598 aactcttagctcgaaccagttgagctacccaaccccctat 5589559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 36665306 - 36665347
Alignment:
Q  450 ctacttaactcttagctcaaaccagttgagctatccaacccc 491  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  36665306 ctacttaacccttagctcaaaccagttaagctacccaacccc 36665347  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 490
Target Start/End: Original strand, 16452169 - 16452277
Alignment:
Q  382 aaatgttagtatgttaattgttgtgtgttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaaccagttgagct 481  Q
    |||||||||||||||| |||||  ||   |||| | ||||||  |||||||||| || |||| ||| |||  | ||| ||||||||||||||||||||||    
T  16452169 aaatgttagtatgttatttgttacgttagttttttctccttgctaggacttgaacccaagacctccaacttttgaacccttagctcaaaccagttgagct 16452268  T
Q  482 atccaaccc 490  Q
    | |||||||    
T  16452269 acccaaccc 16452277  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 10429915 - 10429947
Alignment:
Q  460 cttagctcaaaccagttgagctatccaaccccc 492  Q
    ||||||||||||||||||||||| |||||||||    
T  10429915 cttagctcaaaccagttgagctacccaaccccc 10429947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 26849278 - 26849310
Alignment:
Q  460 cttagctcaaaccagttgagctatccaaccccc 492  Q
    ||||||||||||||||||||||| |||||||||    
T  26849278 cttagctcaaaccagttgagctacccaaccccc 26849310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 36959414 - 36959382
Alignment:
Q  460 cttagctcaaaccagttgagctatccaaccccc 492  Q
    ||||||||||||||||||||||| |||||||||    
T  36959414 cttagctcaaaccagttgagctacccaaccccc 36959382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 492
Target Start/End: Complemental strand, 11099008 - 11098944
Alignment:
Q  428 gacttgaatcctagacttccgactacttaactcttagctcaaaccagttgagctatccaaccccc 492  Q
    |||||| | ||| ||||||| ||| |||||| ||||||||||||| | ||||||| |||||||||    
T  11099008 gacttggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaaccccc 11098944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 43965119 - 43965071
Alignment:
Q  440 agacttccgactacttaactcttagctcaaaccagttgagctatccaac 488  Q
    |||||||| ||| |||| |||||||||||||||| |||||||| |||||    
T  43965119 agacttccaacttcttatctcttagctcaaaccaattgagctacccaac 43965071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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