View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3948_low_11 (Length: 250)
Name: NF3948_low_11
Description: NF3948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3948_low_11 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
| [»] scaffold0128 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 33637319 - 33637561
Alignment:
| Q |
1 |
aactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacagttgttgcatagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33637319 |
aactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacaattgttgcatagaag |
33637418 |
T |
|
| Q |
101 |
cttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatcatc |
200 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33637419 |
cttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctctatcatc |
33637518 |
T |
|
| Q |
201 |
tctcctattatacataataatatcatcaaaagctcctatgcta |
243 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
33637519 |
tctcctattatacatactaatatcatcaaaagctcctttgcta |
33637561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13784 - 13615
Alignment:
| Q |
1 |
aactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaa |
99 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| ||||| |||| | | ||||| |||||||||||||||| ||| ||||||| |||||||||| | |
|
|
| T |
13784 |
aactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaaacaaacatttgttgcatacga |
13685 |
T |
|
| Q |
100 |
gcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
169 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
13684 |
gattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacgaatttggttgt |
13615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 3838303 - 3838134
Alignment:
| Q |
1 |
aactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaa |
99 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| ||||| |||| | | |||| |||||||||||||||| ||| |||||||||||||||||| | |
|
|
| T |
3838303 |
aactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaaacaaacagttgttgcatacga |
3838204 |
T |
|
| Q |
100 |
gcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
169 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||| ||||||||| |||||||| | ||||||||||| |
|
|
| T |
3838203 |
gattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacgaatttggttgt |
3838134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
| Q |
91 |
tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag |
190 |
Q |
| |
|
||||||||||||||||| ||| ||||| | ||||||||||| |||| ||||||||||| ||||||| |||||||| || |||||| |||||| | |
|
|
| T |
29125230 |
tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa |
29125131 |
T |
|
| Q |
191 |
ctttatcatctctcctattatacataata |
219 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |
|
|
| T |
29125130 |
ctctatcatctctcctactatacataata |
29125102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 29126809 - 29126661
Alignment:
| Q |
12 |
gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaata-caaacagttgttgcatagaagcttaatgtgg |
110 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||| |||||||| || ||| || ||| |||| | |||| ||||||||||||||| |||||| || |
|
|
| T |
29126809 |
gaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaatgtatattaaaaaaatcaaattgttgttgcatagaagtttaatg-gg |
29126711 |
T |
|
| Q |
111 |
aagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa |
160 |
Q |
| |
|
|| |||| ||||||| |||||| | |||||||||| | ||||||||| |
|
|
| T |
29126710 |
aatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa |
29126661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 13784126 - 13784247
Alignment:
| Q |
99 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatca |
198 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||| | |||||||||||| || |||||||| ||||| | ||| || || | |||| || ||||| |
|
|
| T |
13784126 |
agcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattgaagaaattcaactatatca |
13784225 |
T |
|
| Q |
199 |
tctctcctattatacataataa |
220 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
13784226 |
tctctccgattatacataataa |
13784247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 33781 - 33907
Alignment:
| Q |
94 |
atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt |
193 |
Q |
| |
|
|||| ||||||||||||| ||||| | |||||||||||||| |||||||||||| || |||||||||||||| | ||||| || | || | || |
|
|
| T |
33781 |
ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta |
33880 |
T |
|
| Q |
194 |
tatcatctctcctattatacataataa |
220 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
33881 |
tatcatctctccgattatacataataa |
33907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 20475663 - 20475806
Alignment:
| Q |
12 |
gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtgg |
110 |
Q |
| |
|
||||||||||||||| |||||| ||| || | || | |||| || | |||| ||||||||| ||| | ||| ||||||||||| | |||||||| ||| |
|
|
| T |
20475663 |
gaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttgttgcattgcagcttaatttgg |
20475762 |
T |
|
| Q |
111 |
aagaggatggggcaaaaccaagctcttcatatgttcatcagcat |
154 |
Q |
| |
|
| |||| | |||||||||||||||| |||||| |||| ||||| |
|
|
| T |
20475763 |
acaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
20475806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University