View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3948_low_3 (Length: 406)
Name: NF3948_low_3
Description: NF3948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3948_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 90 - 334
Target Start/End: Original strand, 44999751 - 44999983
Alignment:
| Q |
90 |
aggaagctcattaggaaagttaattatcattactctttgatcaatttatagtatattctaagcatagttttaaattgtggtcaacaacgtcgtaactcaa |
189 |
Q |
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| T |
44999751 |
aggaagctcattaggaaagttaattatcattactctttgatcaatttatagtatattctaagcatagttttaaattgtggtcaacaacgtcgtaactcaa |
44999850 |
T |
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| Q |
190 |
tttaaaaccaacnnnnnnngcatgaaaaatatcatatacctgaaaatatcccaagctgtagttaaatcaggatcagatggtggaaattgatctttagcta |
289 |
Q |
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| T |
44999851 |
tttaaaaccaactttttt-----------ta-catatacctgaaaatatcccaagctgtagttaaatcaggatcagatggtggaaattgatctttagcta |
44999938 |
T |
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| Q |
290 |
gaaggttgcgatatactggacctacagatagcttgccatttttgc |
334 |
Q |
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| T |
44999939 |
gaaggttgcgatatactggacctacagatagcttgccatttttgc |
44999983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44999670 - 44999716
Alignment:
| Q |
1 |
ttggctgccacactacaatcatatcatatcataatagaaagggtcaattt |
50 |
Q |
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| T |
44999670 |
ttggctgccacactacaatcatatcatatc---atagaaagggtcaattt |
44999716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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