View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3948_low_4 (Length: 370)
Name: NF3948_low_4
Description: NF3948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3948_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 35076049 - 35076391
Alignment:
| Q |
17 |
aaataagtgtttaaaaattgaatatatagataggcataaacctatgtaaagaaattttttaaatagataattctaggtatataatatagtgaataaattt |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35076049 |
aaataagtgtttaaaaattgaatatatagataagcataaacctatgtaaagaaattttttaaatagataattctaggtatataatatagtgaataaattt |
35076148 |
T |
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| Q |
117 |
tct--ttggttcatatataattttactttgcaaactttttgagggaccttaatctataatctcacatatatattctatagtatagtctatacttggtcgc |
214 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35076149 |
tctgcttggttcatatataattttaatttgcaaactttttgagggaccttaatctataatctcacatatatattctatagtatagtctatacttggtcgc |
35076248 |
T |
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| Q |
215 |
acgtaagaagagtatcaagtacatagataattcctctnnnnnnngtacatagataatttggctacaaagcacgtgcaattcaatgagggtacttgggttg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35076249 |
acgtaagaagagtatcaagtacatagataattcctctaaaaaaagtacatagataatttggctacaaagcacgtgcaattcaatgagggtacgtgggttg |
35076348 |
T |
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| Q |
315 |
caatatctagaagaagaaaaaataatcattctgattctgcctctcgtatct |
365 |
Q |
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|||||||| |||||| | |||||||||||||||||||||||||| |
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| T |
35076349 |
caatatct--------aaaaaaaattcattctgattctgcctctcgtatct |
35076391 |
T |
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