View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3948_low_7 (Length: 301)
Name: NF3948_low_7
Description: NF3948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3948_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 41538921 - 41538640
Alignment:
| Q |
1 |
ccagtgaagtataatacagataattagatagaacataatccacccaacgcggagaatatgcaccaccaccaccacttccaatttcagacacagcattttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538921 |
ccagtgaagtataatacagataattagatagaacataatccacccaacgcggcgaatatgcaccaccaccaccacttccaatttcagacacagcattttc |
41538822 |
T |
|
| Q |
101 |
cattttttcaccgttcattgcatcaagctccgaaaactcatcacccttaatactccaaggctccaaataactaatccaaacataaaacacctgagaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538821 |
cattttttcaccgttcattgcatcaagctctgaaaactcatcacccttaatactccaaggctccaaataactaatccaaacataaaacacctgagaaaca |
41538722 |
T |
|
| Q |
201 |
ttcttaactgaagctgccatcggacaaaacaacaacgtcctcaacaaaaacctatacaaaggcctctgcaaacactgattcc |
282 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41538721 |
ttcttaactgaagctgccatcggacaaaacaacaatgtcctcagcaaaaacctatacaaaggcctctgcaaacactgattcc |
41538640 |
T |
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