View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3949_high_1 (Length: 725)

Name: NF3949_high_1
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3949_high_1
NF3949_high_1
[»] chr7 (16 HSPs)
chr7 (399-705)||(20145813-20146119)
chr7 (399-687)||(14986989-14987278)
chr7 (399-687)||(15416600-15416889)
chr7 (399-703)||(2546914-2547215)
chr7 (483-699)||(17600539-17600754)
chr7 (403-665)||(24832402-24832670)
chr7 (483-705)||(3743380-3743608)
chr7 (496-658)||(4173452-4173615)
chr7 (238-331)||(2545771-2545864)
chr7 (250-391)||(20146231-20146371)
chr7 (253-395)||(14986744-14986882)
chr7 (253-395)||(15416355-15416493)
chr7 (251-370)||(4173104-4173222)
chr7 (503-607)||(10649240-10649344)
chr7 (522-654)||(18046371-18046501)
chr7 (249-285)||(2563197-2563233)
[»] chr8 (23 HSPs)
chr8 (399-705)||(28371034-28371341)
chr8 (484-700)||(9218079-9218298)
chr8 (139-395)||(28371450-28371705)
chr8 (250-368)||(23539981-23540099)
chr8 (483-614)||(23540219-23540351)
chr8 (576-702)||(10660970-10661095)
chr8 (483-655)||(9286326-9286498)
chr8 (483-617)||(16600591-16600725)
chr8 (421-583)||(10661748-10661911)
chr8 (502-644)||(13110204-13110345)
chr8 (253-331)||(10662109-10662187)
chr8 (567-614)||(26136195-26136242)
chr8 (504-644)||(18672125-18672261)
chr8 (549-655)||(22713661-22713767)
chr8 (483-547)||(24577344-24577408)
chr8 (154-331)||(16600980-16601159)
chr8 (505-640)||(25095052-25095187)
chr8 (483-655)||(27123582-27123752)
chr8 (552-603)||(15340931-15340983)
chr8 (552-603)||(15429996-15430048)
chr8 (552-603)||(15521300-15521352)
chr8 (552-603)||(41652021-41652073)
chr8 (594-640)||(9006930-9006976)
[»] chr2 (16 HSPs)
chr2 (399-707)||(18929235-18929543)
chr2 (413-705)||(26650839-26651133)
chr2 (158-395)||(18929651-18929887)
chr2 (496-699)||(17402729-17402932)
chr2 (471-686)||(25520385-25520601)
chr2 (496-655)||(31404046-31404205)
chr2 (154-334)||(17403198-17403377)
chr2 (251-370)||(26651281-26651400)
chr2 (399-534)||(19878981-19879117)
chr2 (399-655)||(24543870-24544126)
chr2 (496-622)||(20478255-20478379)
chr2 (186-306)||(25519999-25520118)
chr2 (494-607)||(29891263-29891376)
chr2 (552-603)||(28760672-28760724)
chr2 (554-640)||(17162015-17162101)
chr2 (554-655)||(17636690-17636791)
[»] chr5 (27 HSPs)
chr5 (412-679)||(19217911-19218177)
chr5 (407-665)||(20064388-20064653)
chr5 (399-665)||(20060802-20061075)
chr5 (399-614)||(20713228-20713443)
chr5 (398-614)||(23210024-23210240)
chr5 (399-665)||(20058550-20058824)
chr5 (181-388)||(20064063-20064265)
chr5 (401-614)||(25951315-25951528)
chr5 (250-370)||(25951664-25951783)
chr5 (251-370)||(20058300-20058418)
chr5 (250-348)||(21165557-21165655)
chr5 (248-370)||(23209772-23209893)
chr5 (483-583)||(23379373-23379474)
chr5 (496-655)||(17167275-17167433)
chr5 (549-655)||(19924022-19924128)
chr5 (507-703)||(23355581-23355777)
chr5 (522-655)||(24878356-24878489)
chr5 (251-370)||(20061207-20061323)
chr5 (549-655)||(19926749-19926855)
chr5 (501-634)||(17987487-17987619)
chr5 (251-295)||(19217727-19217771)
chr5 (297-370)||(20713575-20713647)
chr5 (224-332)||(24878782-24878889)
chr5 (220-295)||(17987914-17987988)
chr5 (220-330)||(22011479-22011588)
chr5 (672-703)||(24878288-24878319)
chr5 (554-603)||(31533052-31533102)
[»] chr3 (25 HSPs)
chr3 (399-705)||(15686859-15687166)
chr3 (471-698)||(24699049-24699275)
chr3 (483-699)||(26010836-26011055)
chr3 (503-686)||(13428733-13428914)
chr3 (153-331)||(9033046-9033225)
chr3 (398-703)||(4765605-4765916)
chr3 (483-678)||(4769742-4769937)
chr3 (399-614)||(7148790-7149005)
chr3 (483-705)||(4832516-4832740)
chr3 (399-622)||(9033398-9033622)
chr3 (399-611)||(29614512-29614724)
chr3 (183-372)||(4765286-4765475)
chr3 (507-649)||(23378488-23378631)
chr3 (154-367)||(4770096-4770307)
chr3 (483-614)||(16242937-16243069)
chr3 (252-370)||(24698727-24698845)
chr3 (251-331)||(15687340-15687420)
chr3 (253-346)||(16242605-16242699)
chr3 (251-369)||(29614037-29614155)
chr3 (522-645)||(27304424-27304547)
chr3 (264-372)||(4832190-4832300)
chr3 (571-645)||(8737234-8737308)
chr3 (571-645)||(9089472-9089546)
chr3 (594-640)||(13409833-13409879)
chr3 (251-334)||(13428406-13428488)
[»] chr6 (20 HSPs)
chr6 (477-705)||(22397548-22397777)
chr6 (399-614)||(16177304-16177519)
chr6 (154-367)||(17525233-17525444)
chr6 (398-610)||(15830026-15830238)
chr6 (496-696)||(17524797-17524998)
chr6 (483-614)||(1177214-1177349)
chr6 (184-312)||(31125745-31125872)
chr6 (522-655)||(18713709-18713842)
chr6 (522-655)||(17947890-17948023)
chr6 (550-655)||(14762985-14763090)
chr6 (157-331)||(22394009-22394179)
chr6 (399-665)||(31126065-31126351)
chr6 (251-335)||(16177672-16177759)
chr6 (292-369)||(1176918-1176994)
chr6 (552-653)||(28712360-28712461)
chr6 (552-603)||(13002854-13002906)
chr6 (262-348)||(32784447-32784534)
chr6 (570-640)||(25945846-25945916)
chr6 (554-603)||(24154179-24154229)
chr6 (552-596)||(10163272-10163317)
[»] chr4 (9 HSPs)
chr4 (471-705)||(11361595-11361830)
chr4 (497-698)||(9409168-9409370)
chr4 (250-393)||(11362017-11362160)
chr4 (483-655)||(16675086-16675259)
chr4 (552-614)||(5358040-5358102)
chr4 (483-655)||(4697454-4697626)
chr4 (593-640)||(18558469-18558516)
chr4 (552-602)||(26654144-26654195)
chr4 (217-295)||(10071001-10071078)
[»] chr1 (17 HSPs)
chr1 (399-660)||(20146169-20146437)
chr1 (399-679)||(11013745-11014027)
chr1 (399-649)||(33103021-33103273)
chr1 (254-391)||(20146549-20146686)
chr1 (251-372)||(11013493-11013614)
chr1 (483-655)||(36571655-36571826)
chr1 (484-611)||(20150435-20150563)
chr1 (139-332)||(22619579-22619770)
chr1 (485-635)||(22607834-22607984)
chr1 (399-611)||(13201980-13202192)
chr1 (483-641)||(17615272-17615430)
chr1 (522-612)||(22620063-22620153)
chr1 (583-655)||(20866221-20866293)
chr1 (471-534)||(13232737-13232801)
chr1 (594-633)||(20886571-20886610)
chr1 (553-603)||(23455191-23455242)
chr1 (250-332)||(17615684-17615766)
[»] scaffold0555 (2 HSPs)
scaffold0555 (399-660)||(5582-5851)
scaffold0555 (258-391)||(5337-5470)
[»] scaffold0264 (2 HSPs)
scaffold0264 (399-705)||(20793-21097)
scaffold0264 (261-372)||(21225-21337)
[»] scaffold0002 (2 HSPs)
scaffold0002 (399-655)||(374041-374294)
scaffold0002 (154-307)||(373696-373847)
[»] scaffold0337 (2 HSPs)
scaffold0337 (483-655)||(17221-17392)
scaffold0337 (540-655)||(4546-4661)
[»] scaffold0795 (2 HSPs)
scaffold0795 (251-395)||(5725-5869)
scaffold0795 (399-459)||(5971-6031)
[»] scaffold0016 (1 HSPs)
scaffold0016 (483-583)||(12991-13092)
[»] scaffold0161 (1 HSPs)
scaffold0161 (258-370)||(5276-5388)
[»] scaffold0142 (1 HSPs)
scaffold0142 (471-624)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (483-607)||(871-996)
[»] scaffold0040 (1 HSPs)
scaffold0040 (552-655)||(26930-27031)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 399 - 705
Target Start/End: Complemental strand, 20146119 - 20145813
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||||| |||||||||||| ||| |  || ||||| ||||  |||||| |||||  ||    
T  20146119 tgggagacaagcggttgtcttcatggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaa 20146020  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    |||||||||||||||||| || || |||||||||||| || |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20146019 aacgggtcgcaaatcacccatgcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaacca 20145920  T
Q  598 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 697  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||    
T  20145919 cctttatttttaatgcattgtattctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaaag 20145821  T
Q  698 acgccaca 705  Q
    ||||||||    
T  20145820 acgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 399 - 687
Target Start/End: Original strand, 14986989 - 14987278
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||| ||||||||||||||||||  ||    
T  14986989 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 14987087  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  14987088 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 14987187  T
Q  598 cctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 687  Q
    |||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  14987188 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 399 - 687
Target Start/End: Original strand, 15416600 - 15416889
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||| ||||||||||||||||||  ||    
T  15416600 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 15416698  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15416699 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 15416798  T
Q  598 cctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 687  Q
    |||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  15416799 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 399 - 703
Target Start/End: Complemental strand, 2547215 - 2546914
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| ||||||||| |  |   | ||| ||||| | ||| ||||||||||||  ||    
T  2547215 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttctagttatttttctatgtataagtaatagttttccatagggaa 2547116  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    |||||||||||||||||||||| | |||||||||||| || ||||||||   |||||||||| |||||||||||||| |||||||||||||| |  ||||    
T  2547115 aacgggtcgcaaatcacctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagacca 2547016  T
Q  598 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 697  Q
    ||||||||||     ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  2547015 cctttatttta----cattgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaag 2546920  T
Q  698 acgcca 703  Q
    ||||||    
T  2546919 acgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 483 - 699
Target Start/End: Complemental strand, 17600754 - 17600539
Alignment:
Q  483 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| || |||||||||  |||||| |||||||||||||||||||||||||    
T  17600754 agttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaagaatgtatgtaa 17600655  T
Q  582 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc 681  Q
    |||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| |||| || ||||||||| |  | |||| ||||| |||||||||||    
T  17600654 aggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttttcttttaaaacc 17600557  T
Q  682 ttttttctgtcgaaagac 699  Q
    |||||| |||||||||||    
T  17600556 ttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 403 - 665
Target Start/End: Complemental strand, 24832670 - 24832402
Alignment:
Q  403 agacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacg 501  Q
    ||||||||| ||||||||||||||| |||| ||||  || |||| ||||||||| |  ||| |  || ||||| ||||| |||||| |||||  ||||||    
T  24832670 agacaagcggttgtctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacg 24832572  T
Q  502 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 601  Q
    ||||||||||| |||||||| |||| ||||||| || ||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  24832571 ggtcgcaaatcgcctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccat 24832473  T
Q  602 tatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 665  Q
    |||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  24832472 tatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 483 - 705
Target Start/End: Complemental strand, 3743608 - 3743380
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta 580  Q
    ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||   |||||||||||||||| |||||||  |    
T  3743608 agttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataaaaaatgtataca 3743509  T
Q  581 aaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt-aaactt-aatgccttaactttgctttt--a 676  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||  ||||||| | | ||||||||||| |||||| |||||||| ||||| || ||  |    
T  3743508 aaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttactttactgttaaa 3743409  T
Q  677 aaaccttttttctgtcgaaagacgccaca 705  Q
    ||||| ||||| ||||||||||| |||||    
T  3743408 aaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 496 - 658
Target Start/End: Original strand, 4173452 - 4173615
Alignment:
Q  496 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 595  Q
    ||||||||||||||||| |||||| | |||||||||||| || ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  4173452 aaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 4173551  T
Q  596 cacctttatttttaatgca-ttgtattttacctttcctttacgtttctgcaatttaaacttaat 658  Q
     |  ||||| ||||||||| ||| ||||    ||| ||||| ||||||||||||||||||||||    
T  4173552 tagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 2545864 - 2545771
Alignment:
Q  238 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 331  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtctttt 2545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 20146371 - 20146231
Alignment:
Q  250 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 349  Q
    ||||||| ||||||||||| |||| | || |||||||||||||||| ||||| ||||||| ||  |||||| ||||  ||| ||||  | ||||||||||    
T  20146371 ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagttt 20146272  T
Q  350 caaagagatgttggacttagcattgaaaagtctcgaagcctt 391  Q
    ||| ||||||||||| |||||| | |||||||| ||||||||    
T  20146271 caacgagatgttggagttagca-taaaaagtcttgaagcctt 20146231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 253 - 395
Target Start/End: Original strand, 14986744 - 14986882
Alignment:
Q  253 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 351  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  14986744 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 14986838  T
Q  352 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 395  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  14986839 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 14986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 253 - 395
Target Start/End: Original strand, 15416355 - 15416493
Alignment:
Q  253 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 351  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  15416355 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 15416449  T
Q  352 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 395  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  15416450 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 15416493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 251 - 370
Target Start/End: Original strand, 4173104 - 4173222
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 350  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| ||||| || || | ||||||| ||  |||| ||| ||||||||||| ||| |||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattttgcaggtatcaaagtatttccttcaatcaaaagag-ttc 4173202  T
Q  351 aaagagatgttggacttagc 370  Q
     | |||||||||||| ||||    
T  4173203 gacgagatgttggacctagc 4173222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 607
Target Start/End: Original strand, 10649240 - 10649344
Alignment:
Q  503 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccacctt 601  Q
    |||||||||||| |||| ||| ||| |||||| || |||||||||  |||||||||||||| ||||||||||||||||||  |||||  | |||||||||    
T  10649240 gtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaagaatgtatgtaaactgattttccaaaccacctt 10649338  T
Q  602 tatttt 607  Q
    ||||||    
T  10649339 tatttt 10649344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 654
Target Start/End: Complemental strand, 18046501 - 18046371
Alignment:
Q  522 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtat 620  Q
    ||||||||||||| |  ||||||||| |||||| |||||   |||| | ||||| ||||| | |||||||||||||||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaagg--catacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  621 tttacctttcctttacgtttctgcaatttaaact 654  Q
    ||||||||| ||||| |||| |||  ||||||||    
T  18046404 tttaccttttctttaagtttttgcgttttaaact 18046371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  249 tttgttagctggtattttcaccagcctcatttaatgt 285  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 399 - 705
Target Start/End: Complemental strand, 28371341 - 28371034
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-a 496  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| |||| |||||||||||| ||| | |||| ||||| ||||  ||||||||||||  |    
T  28371341 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccataggga 28371243  T
Q  497 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    ||| ||||||||||||||||||| |||||||||||||| || ||||||| | | ||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  28371242 aaatgggtcgcaaatcacctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacc 28371143  T
Q  597 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 696  Q
     ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  28371142 tcctttatttttaatgcattgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaa 28371043  T
Q  697 gacgccaca 705  Q
    |||||||||    
T  28371042 gacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 484 - 700
Target Start/End: Complemental strand, 9218298 - 9218079
Alignment:
Q  484 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 582  Q
    |||||||||||  ||||||||||||||||||| |||||| |||||||||||| || ||||||||  ||||||||||||  ||||| ||||||||||||||    
T  9218298 gttttccatagggaaaacgggtcgcaaatcacatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaa 9218201  T
Q  583 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc- 681  Q
     |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||||||||||| |     
T  9218200 tgatttgtcgaaccatctttatttttaatgcattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacc 9218101  T
Q  682 ---ttttttctgtcgaaagacg 700  Q
       |||||||||||||||||||    
T  9218100 tttttttttctgtcgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 139 - 395
Target Start/End: Complemental strand, 28371705 - 28371450
Alignment:
Q  139 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 238  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattttt 28371606  T
Q  239 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat 338  Q
    ||| || ||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| ||||| ||||| ||| | |||||| |||  |||| | ||| |    
T  28371605 tggtgg-caatttgttagttggtattttcactagcataatttaatgtggccaatattagttgacttttattctggtaggaatcgaaacctttccctcagt 28371507  T
Q  339 caaaggagtttcaaagagatgttggacttagcattgaaaagtctcgaagccttaaag 395  Q
     ||||||||||  | |||||||||||||||||||  |||||||| ||||||||||||    
T  28371506 taaaggagttttgacgagatgttggacttagcatgaaaaagtctggaagccttaaag 28371450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 250 - 368
Target Start/End: Original strand, 23539981 - 23540099
Alignment:
Q  250 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 349  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagttt 23540080  T
Q  350 caaagagatgttggactta 368  Q
    | | |||||||||||||||    
T  23540081 cgacgagatgttggactta 23540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 483 - 614
Target Start/End: Original strand, 23540219 - 23540351
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | ||||||||||||  | |||||||||| |||||||||||||||||||    
T  23540219 agttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaagaatgtatgtaa 23540318  T
Q  582 aggatttgtcgaaccacctttatttttaatgca 614  Q
    | ||||| |||||||||||||||||||||||||    
T  23540319 aagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 576 - 702
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  576 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 675  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||  || ||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  676 aaaaccttttttctgtcgaaagacgcc 702  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 483 - 655
Target Start/End: Original strand, 9286326 - 9286498
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||||| ||| ||| | |||||||||||    
T  9286326 agttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaaaatgtatgtaa 9286424  T
Q  582 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    |||||||||||||| |||||||||||||||||| || | |||| ||||  |||| ||||||||| ||| |||||    
T  9286425 aggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 483 - 617
Target Start/End: Complemental strand, 16600725 - 16600591
Alignment:
Q  483 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||| ||||| ||| | |||||| ||||    
T  16600725 agttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttatacataatgtacgtaa 16600627  T
Q  582 aggatttgtcgaaccacctttatttttaatgcattg 617  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16600626 aggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 421 - 583
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  421 atggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaatcacctata 519  Q
    ||||||| |||| |||| |||||||| |||||||||||  ||  | ||| ||||| |||||||||||||||| |  ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttccag-ttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  520 caaaattctaaaacat-tcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 583  Q
    || ||||||||||  | |||| ||||||| |||| | ||||||||||||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 502 - 644
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  502 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 601  Q
    ||||||||||||| |||| ||| ||||| |||| || ||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| ||||||||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  602 tatttttaatgcattgtattttacctttcctttacgtttctgc 644  Q
    ||||||||||||| || | |||| |||| ||||| ||||||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 10662187 - 10662109
Alignment:
Q  253 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 331  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtctttt 10662109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 614
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  567 aaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 614  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 504 - 644
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  504 tcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttta 603  Q
    ||||||||||| |||| ||| ||||| |||| || |||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  604 tttttaatgcattgtattttacctttcctttacgtttctgc 644  Q
    ||||||||||| |||| |||| |||| ||| | ||||||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 549 - 655
Target Start/End: Original strand, 22713661 - 22713767
Alignment:
Q  549 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 648  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| |||||||||||||||||||||| ||||  ||| |||| ||||| |||||| || ||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtttctacactt 22713760  T
Q  649 taaactt 655  Q
    | |||||    
T  22713761 ttaactt 22713767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 483 - 547
Target Start/End: Original strand, 24577344 - 24577408
Alignment:
Q  483 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccgg 547  Q
    |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| || |||||||||    
T  24577344 agtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 331
Target Start/End: Complemental strand, 16601159 - 16600980
Alignment:
Q  154 tgacatcatgctttgaaatacttag--cgttttctcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatt 250  Q
    ||||||||||||||||||| ||| |  |||||| |||||||||||||||| |||| | ||  | | ||| |||||||||| ||||| ||| ||| |||||    
T  16601159 tgacatcatgctttgaaatgcttgggacgtttt-tcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatt 16601062  T
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 331  Q
    | |||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| ||||||   |||||||||||||||| ||||    
T  16601061 tattagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttttatctttgcaggaattgaagtatttt 16600980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 640
Target Start/End: Complemental strand, 25095187 - 25095052
Alignment:
Q  505 cgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaaccaccttta 603  Q
    |||||||||| |||| ||| ||||||||||  | ||||||||| |||||| |||||||| ||| |  |||||||| |||  |||||||||||||||||||    
T  25095187 cgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatacatgatgtatgtaaaattatttgtcgaaccaccttta 25095089  T
Q  604 tttttaatgcattgtattttacctttcctttacgttt 640  Q
    || | |||||| || | |||| |||| ||||| ||||    
T  25095088 ttataaatgcaatgcaatttatcttttctttaagttt 25095052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 483 - 655
Target Start/End: Original strand, 27123582 - 27123752
Alignment:
Q  483 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| |||  ||||||  ||||||||||||||| ||| | |||||||||||    
T  27123582 agttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactca--gtaccgatgcgagagaaaagagttatacataatgtatgtaa 27123678  T
Q  582 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
       ||||| |||||||||||||| |||||||||| || | |||| | |||||||| |||| |||  |||||||||    
T  27123679 tctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtttatgcgttttaaactt 27123752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 15340931 - 15340983
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 603  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15340931 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15340983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 15429996 - 15430048
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 603  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15429996 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15430048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 15521300 - 15521352
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 603  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15521300 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15521352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 41652021 - 41652073
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 603  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  41652021 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccttta 41652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 640
Target Start/End: Complemental strand, 9006976 - 9006930
Alignment:
Q  594 accacctttatttttaatgcattgtattttacctttcctttacgttt 640  Q
    ||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  9006976 accacctttatttttaatgcaatacattttacctttcctttaagttt 9006930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 7e-91; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 399 - 707
Target Start/End: Complemental strand, 18929543 - 18929235
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| | ||| || || ||||  ||||||||| ||  ||    
T  18929543 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaa 18929444  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    || |||| |||||||||||||| | |||||||||||| || ||||||||| | ||||||| | |||||||||||||||||||||| ||||| ||||||||    
T  18929443 aatgggttgcaaatcacctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaacca 18929344  T
Q  598 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 697  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||     
T  18929343 cctttatttttaatgcattgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaaat 18929245  T
Q  698 acgccacagg 707  Q
    ||||||||||    
T  18929244 acgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 413 - 705
Target Start/End: Complemental strand, 26651133 - 26650839
Alignment:
Q  413 ttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaat 511  Q
    ||||||||||||||  |||||| || |||||||| ||||||||| |  |   | ||| ||||| ||||||||||||||||||  ||||| ||||||||||    
T  26651133 ttgtctacatggaatgagtgctaatcgtgggattggtttctttctagttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaat 26651034  T
Q  512 cacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaat 611  Q
    |||||||||| |||||||||||| || ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26651033 cacctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataat 26650934  T
Q  612 gcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-ccttttttctgtcgaaagacgccaca 705  Q
     ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26650933 ccattgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 158 - 395
Target Start/End: Complemental strand, 18929887 - 18929651
Alignment:
Q  158 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 257  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  258 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 357  Q
    |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| |  |||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttcgacaaga 18929689  T
Q  358 tgttggacttagcattgaaaagtctcgaagccttaaag 395  Q
    | |||||||||||||  |||||||||||| ||||||||    
T  18929688 ttttggacttagcatgaaaaagtctcgaatccttaaag 18929651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 496 - 699
Target Start/End: Complemental strand, 17402932 - 17402729
Alignment:
Q  496 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 595  Q
    ||||| |||||||||||||||||| | |||||||||||| || |||||||||  |||||||||| ||| ||||||||||||||||||||||||||  |||    
T  17402932 aaaacaggtcgcaaatcacctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataac 17402833  T
Q  596 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaa 695  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||    
T  17402832 cacctttatttttaatgcattgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaa 17402733  T
Q  696 agac 699  Q
    ||||    
T  17402732 agac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 471 - 686
Target Start/End: Original strand, 25520385 - 25520601
Alignment:
Q  471 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 569  Q
    ||||| ||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| || ||||  ||| ||||||||||||||||||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  570 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 669  Q
     |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||| |||||  |||||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  670 gcttttaaaaccttttt 686  Q
    |||||||||||||||||    
T  25520585 gcttttaaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 496 - 655
Target Start/End: Original strand, 31404046 - 31404205
Alignment:
Q  496 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaa 594  Q
    |||| |||||||||||||| |||  ||| |||||||||| || ||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||||    
T  31404046 aaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttatacagaatgtatgtaaaatgatttgtcgaa 31404144  T
Q  595 ccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    ||||||||  |||||||||| || | ||||||||| ||||| ||||||||| |||||||||    
T  31404145 ccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 154 - 334
Target Start/End: Complemental strand, 17403377 - 17403198
Alignment:
Q  154 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 253  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  254 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 334  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||| | ||||||  |||||| |||||||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaagtcttttctt 17403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 251 - 370
Target Start/End: Complemental strand, 26651400 - 26651281
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 350  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||| ||||||||||   ||||||||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaacttaaggagtttc 26651301  T
Q  351 aaagagatgttggacttagc 370  Q
    || || ||||||||||||||    
T  26651300 aacgatatgttggacttagc 26651281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 399 - 534
Target Start/End: Complemental strand, 19879117 - 19878981
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatag-aaa 497  Q
    ||||||||||||||||||| |||||  || |||| |||| |||||||| |||||||||||| ||| | ||| ||||  ||||  |||||||||||| |||    
T  19879117 tgggagacaagcgtttgtcaacatgagaggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaa 19879018  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaaca 534  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19879017 aacgggtcgcaaatcacctatacagaattctaaaaca 19878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 399 - 655
Target Start/End: Complemental strand, 24544126 - 24543870
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtat-ctttgtattaataagagttttccatag-aa 496  Q
    ||||||||||||| | || |||||||||| ||||||||| ||||  || | || ||||||  ||| | | || ||||| ||||  |||||||||||| ||    
T  24544126 tgggagacaagcggtagtttacatggaagaagtgctgatcgtggagttaggttttttccag-ttattttactatgtataaatagtagttttccataggaa 24544028  T
Q  497 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    ||||||||| |||||||| |||| ||| ||  | |||| || ||||| ||| ||||||||||||| | ||| | ||| |||||||||||||| | |||||    
T  24544027 aaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttatacataatatatgtaaaggatttctggaacc 24543929  T
Q  597 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    |||||||||||||||||| || | ||||  ||||||  | |||| |||||||| |||||    
T  24543928 acctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 622
Target Start/End: Original strand, 20478255 - 20478379
Alignment:
Q  496 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaa 594  Q
    |||| |||||||||||||  |||||| ||||||| |||| ||||| |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  595 ccacctttatttttaatgcattgtattt 622  Q
    ||||||||| |||||||| |||| ||||    
T  20478352 ccacctttaattttaatgaattgcattt 20478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 25519999 - 25520118
Alignment:
Q  186 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 285  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  286 ggtcaacattggttgattttt 306  Q
     ||||||||| ||||| ||||    
T  25520098 agtcaacattagttgactttt 25520118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 607
Target Start/End: Original strand, 29891263 - 29891376
Alignment:
Q  494 gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta-aaggatttgtcg 592  Q
    ||||||||||||||| ||||| |||| ||| || ||||||| |||||||| ||| ||||||||||||| | ||| | |||||||||| |  ||| |||||    
T  29891263 gaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttatacaaaatgtatgtacactgatatgtcg 29891361  T
Q  593 aaccacctttatttt 607  Q
    |||||| ||||||||    
T  29891362 aaccacatttatttt 29891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 28760672 - 28760724
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 603  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  28760672 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 640
Target Start/End: Original strand, 17162015 - 17162101
Alignment:
Q  554 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 640  Q
    |||||||| ||||| |||||||||||||   |||||||||| ||||||||| | |||||||| || | ||||||||||||||| ||||    
T  17162015 agaaaagaatcatacagaatgtatgtaatctgatttgtcgagccaccttta-tattaatgcaatgcaatttacctttcctttaagttt 17162101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 554 - 655
Target Start/End: Complemental strand, 17636791 - 17636690
Alignment:
Q  554 agaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaa 652  Q
    |||||||||||||| | |||||||||||   ||||||||||||||||||||   ||||||||  | | ||||||||| ||||| ||||||||  ||||||    
T  17636791 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaaggcaatttaccttttctttaagtttctgcgttttaaa 17636693  T
Q  653 ctt 655  Q
    |||    
T  17636692 ctt 17636690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 412 - 679
Target Start/End: Original strand, 19217911 - 19218177
Alignment:
Q  412 tttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaa 510  Q
    |||||||||||| ||| ||||||| | |||||||| |||||||||||  ||| | | | ||||| |||||  |||||||||||  |||||||||||||||    
T  19217911 tttgtctacatgaaaggagtgctggtcgtgggattagtttctttccag-ttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaa 19218009  T
Q  511 tcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 610  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19218010 tcacctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 19218108  T
Q  611 tgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa 679  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  19218109 tgcattgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 407 - 665
Target Start/End: Original strand, 20064388 - 20064653
Alignment:
Q  407 aagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtc 505  Q
    ||||| |||||||||||||||  ||||||||||||||||| |||||||||||  ||| |  || ||||| ||||| ||||||||||||  ||||||||||    
T  20064388 aagcggttgtctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtc 20064486  T
Q  506 gcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatt 605  Q
    ||||||| |||||||| |||||||||||| | |||||||||| || |||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  20064487 gcaaatcgcctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatt 20064586  T
Q  606 tttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 665  Q
    |||||||||       || ||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20064587 tttaatgcacttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 399 - 665
Target Start/End: Complemental strand, 20061075 - 20060802
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaaa 498  Q
    ||||||||||||| |||| |||||| ||  |||| |||| |||||||| ||||||||| || ||| |  || ||||| ||| | ||||||||||||   |    
T  20061075 tgggagacaagcgattgtgtacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggta 20060977  T
Q  499 -acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
     |||||| ||||||| |||||||| ||||||||||||||  || |||||| || |||||||||||||||||| |||||||||||||||||||||||||||    
T  20060976 gacgggttgcaaatcgcctatacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaacca 20060877  T
Q  598 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 665  Q
    |||||||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20060876 cctttatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 399 - 614
Target Start/End: Complemental strand, 20713443 - 20713228
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| || ||| |  || ||||| ||||| ||||||||||||  ||    
T  20713443 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaa 20713345  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    ||||||||||||||| | |||||| |||||||||||| || || |||||  || ||||||||||||||||||||||||||||||  ||||||| |||| |    
T  20713344 aacgggtcgcaaatcgcatatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaa 20713245  T
Q  598 cctttatttttaatgca 614  Q
    |||||||||||||||||    
T  20713244 cctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 398 - 614
Target Start/End: Original strand, 23210024 - 23210240
Alignment:
Q  398 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-a 496  Q
    |||||||||||||| ||||||| ||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||| ||||| ||||| ||||||  |    
T  23210024 atgggagacaagcggttgtctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccataggga 23210122  T
Q  497 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    |||| |||||||||||   |||||| |||||||||||| || ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  23210123 aaacaggtcgcaaatcgtatatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaacc 23210222  T
Q  597 acctttatttttaatgca 614  Q
    || |||||||||||||||    
T  23210223 acttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 399 - 665
Target Start/End: Original strand, 20058550 - 20058824
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 497  Q
    ||||||||||||| |||| | |||||||| ||||||||| |||||||| |||| ||| | | ||| |  || ||||| ||| | ||||||||||| |  |    
T  20058550 tgggagacaagcggttgtttgcatggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggta 20058649  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
     || ||| ||||||| ||||| |||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||| |||||||||||||    
T  20058650 gacaggttgcaaatcgcctatgcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaacca 20058749  T
Q  598 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 665  Q
    |||||||||||||||||       |||||||||   |||  |||| |||||||||||||||||||||||| ||||    
T  20058750 cctttatttttaatgcaattgcatttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 181 - 388
Target Start/End: Original strand, 20064063 - 20064265
Alignment:
Q  181 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 280  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  281 aatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagcattgaaaagt 380  Q
    ||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||| | |||||||||||| ||||  | ||||||    
T  20064160 aatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttcgacgagatgttggacctagc-gtaaaaagt 20064257  T
Q  381 ctcgaagc 388  Q
    ||||||||    
T  20064258 ctcgaagc 20064265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 401 - 614
Target Start/End: Complemental strand, 25951528 - 25951315
Alignment:
Q  401 ggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaa 499  Q
    ||||||||||| ||||||||||||||| |||| |||| ||| |||| |||||||| | | ||| |  |  ||||| ||||| ||||||||||||  ||||    
T  25951528 ggagacaagcggttgtctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaa 25951429  T
Q  500 cgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacc 599  Q
    | ||||| ||||| | |||||| |||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||      
T  25951428 caggtcgtaaatcgcttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaaccaat 25951330  T
Q  600 tttatttttaatgca 614  Q
    |||| | ||||||||    
T  25951329 tttactcttaatgca 25951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 250 - 370
Target Start/End: Complemental strand, 25951783 - 25951664
Alignment:
Q  250 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  |||||||||||  ||||||||||| ||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggag-tt 25951685  T
Q  350 caaagagatgttggacttagc 370  Q
    ||| || |||||||| |||||    
T  25951684 caacgaaatgttggatttagc 25951664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 251 - 370
Target Start/End: Original strand, 20058300 - 20058418
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 350  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttc 20058398  T
Q  351 aaagagatgttggacttagc 370  Q
     | |||||||||||| ||||    
T  20058399 gacgagatgttggacctagc 20058418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 21165655 - 21165557
Alignment:
Q  250 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 348  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||||||||||||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagtt 21165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 23209772 - 23209893
Alignment:
Q  248 atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagt 347  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||||||| ||||||||     
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggag- 23209870  T
Q  348 ttcaaagagatgttggacttagc 370  Q
    ||| | ||||||||||| |||||    
T  23209871 ttcgacgagatgttggatttagc 23209893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 583
Target Start/End: Original strand, 23379373 - 23379474
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  23379373 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 23379472  T
Q  582 ag 583  Q
    ||    
T  23379473 ag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 496 - 655
Target Start/End: Original strand, 17167275 - 17167433
Alignment:
Q  496 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 595  Q
    |||||||||| |||||||| |||| ||| ||||| ||||    ||||||| | ||||||||||||||| ||| | |||||||||||||||||||||||||    
T  17167275 aaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaatacaaaatgtatgtaaaggatttgtcgaac 17167373  T
Q  596 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    ||||||||||||||||| | || | |||| |||| ||||| |||||| || ||| |||||    
T  17167374 cacctttatttttaatgtaatgcaatttatcttttctttaagtttctacacttttaactt 17167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 549 - 655
Target Start/End: Original strand, 19924022 - 19924128
Alignment:
Q  549 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 648  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||| |||| |||| ||    
T  19924022 gcgagagaaaagagttatacagaatgtatataaaagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtttatgcactt 19924121  T
Q  649 taaactt 655  Q
    | |||||    
T  19924122 ttaactt 19924128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 507 - 703
Target Start/End: Complemental strand, 23355777 - 23355581
Alignment:
Q  507 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttattt 606  Q
    ||||| ||||||||| ||||||| |||| |  ||||||||| |  || ||||| ||||||| | ||| |||||||| ||||| ||  |||||||||| ||    
T  23355777 caaattacctatacagaattctagaacacttgaagtaccggcgttagggaaaatagtcatacaaaatatatgtaaatgatttttcagaccacctttactt 23355678  T
Q  607 ttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgcca 703  Q
    |||||||| || | |||| |||| ||||| ||||||||||||| ||||| || |||| ||||||| |||||||| ||||| |  ||||| |||||||    
T  23355677 ttaatgcaatgcaatttatcttttctttatgtttctgcaattttaactttattcctttactttgcatttaaaacgtttttcccatcgaatgacgcca 23355581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 522 - 655
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  522 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 621  Q
    |||||||| |||| || || |||||  ||||||||||||||| |||   ||| ||||||||||||||||| |||||||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  622 ttacctttcctttacgtttctgcaatttaaactt 655  Q
    ||| |||| ||||| ||||||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 251 - 370
Target Start/End: Complemental strand, 20061323 - 20061207
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 350  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||| ||||| | |||    
T  20061323 tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt-ttttcttcaatgaaaggtg-ttc 20061227  T
Q  351 aaagagatgttggacttagc 370  Q
     | |||||||||||||||||    
T  20061226 gacgagatgttggacttagc 20061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 655
Target Start/End: Original strand, 19926749 - 19926855
Alignment:
Q  549 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 648  Q
    ||||||||||| ||| ||| ||||||||  |||| ||||||||||||||||||||||||||||||| || | |||| |||| ||||| |||| |||| ||    
T  19926749 gcgagagaaaatagttatacagaatgtaaataaaagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttatgcactt 19926848  T
Q  649 taaactt 655  Q
    | |||||    
T  19926849 ttaactt 19926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 501 - 634
Target Start/End: Complemental strand, 17987619 - 17987487
Alignment:
Q  501 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccac 598  Q
    |||||||||||||  |||||| |||||||||||| ||||| |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || ||||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtaga-ccac 17987523  T
Q  599 ctttatttttaatgcattgtattttacctttccttt 634  Q
    |||||||||||||||| || ||||||||||||||||    
T  17987522 ctttatttttaatgcaatgcattttacctttccttt 17987487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 295  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 20713647 - 20713575
Alignment:
Q  297 gttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagc 370  Q
    ||||| ||||| ||||||||||||  |||||||||||||||||||||||| ||| | ||||| |||||||||||    
T  20713647 gttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggag-ttcgacgagatattggacttagc 20713575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 24878889 - 24878782
Alignment:
Q  224 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga 323  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| |||||   ||||| |||| ||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga 24878791  T
Q  324 agtcttttc 332  Q
    |||||||||    
T  24878790 agtcttttc 24878782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  220 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 295  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
Q  220 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg 317  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg 22011492  T
Q  318 aattgaagtcttt 330  Q
    ||| |||| ||||    
T  22011491 aatcgaaggcttt 22011479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 703
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  672 ttttaaaaccttttttctgtcgaaagacgcca 703  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 554 - 603
Target Start/End: Original strand, 31533052 - 31533102
Alignment:
Q  554 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 603  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31533052 agaaaagagtcatagagaatgtatgtaatctgatttgtcgaaccaccttta 31533102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 3e-78; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 399 - 705
Target Start/End: Complemental strand, 15687166 - 15686859
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaa-a 497  Q
    ||||||||||||| ||| |||||| |||| |||| |||| |||||||| |||||||||||  ||| | ||| ||||| ||||||||||||||||||   |    
T  15687166 tgggagacaagcggttgcctacatagaaggagtgatgatcgtgggattagtttctttccag-ttattttctatgtataaataagagttttccatagtgga 15687068  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaac-attcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    |||| ||||||||||||||||||  ||||||||||  | || ||||||||  |||||||||||||||| ||||||||||||| || |||||| | | |||    
T  15687067 aacgagtcgcaaatcacctatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggacc 15686968  T
Q  597 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 696  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  15686967 acctttatttttaatgcattgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaa 15686868  T
Q  697 gacgccaca 705  Q
     ||||||||    
T  15686867 cacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 471 - 698
Target Start/End: Original strand, 24699049 - 24699275
Alignment:
Q  471 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 569  Q
    ||||| ||||| ||||||||||||  ||||||||||||||||| |||||||| |||||||||||| || ||||||||| ||||||||||||| |||  ||    
T  24699049 tgtataaataatagttttccatagggaaaacgggtcgcaaatcccctatacagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aa 24699146  T
Q  570 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 669  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  24699147 gaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtttatgcaatttaaacttaatgcctttacttt 24699246  T
Q  670 gcttttaaaaccttttttctgtcgaaaga 698  Q
    |||| | ||||| ||||||||||||||||    
T  24699247 gcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 483 - 699
Target Start/End: Complemental strand, 26011055 - 26010836
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||    
T  26011055 agttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaagaatgtatgtaa 26010956  T
Q  582 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa---tttaaacttaatgccttaactttgcttttaaa 678  Q
    | ||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||    |||||||||||||||| ||||||||||||||    
T  26010955 atgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttactttgcttttaaa 26010856  T
Q  679 accttttttctgtcgaaagac 699  Q
    | |  ||||||||||||||||    
T  26010855 aac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 503 - 686
Target Start/End: Original strand, 13428733 - 13428914
Alignment:
Q  503 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttt 602  Q
    ||||||||||||||||| ||  |||||||||| || ||||||||  | ||||||||||||| |||||||||||||||||||||||||| ||||||| |||    
T  13428733 gtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacattt 13428830  T
Q  603 atttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttt 686  Q
    ||| |||||||||||||||||| ||||||||||  ||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13428831 attattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 153 - 331
Target Start/End: Original strand, 9033046 - 9033225
Alignment:
Q  153 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 250  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 331  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtctttt 9033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 398 - 703
Target Start/End: Original strand, 4765605 - 4765916
Alignment:
Q  398 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatag-aa 496  Q
    |||||||||||||  ||||||||||||||| ||||  ||| |||||||| ||   | | | | ||| | ||| ||||| ||||  |||||||||||| ||    
T  4765605 atgggagacaagcagttgtctacatggaagaagtgtagatcgtgggatt-gtacttgttctagttattttctatgtataaatagtagttttccataggaa 4765703  T
Q  497 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaat----gtatgtaaaggatttgtcg 592  Q
    ||| ||||||||||||||||||| |  ||||||||||| |  | ||||  | |||||||||||||||||||||||||    ||||||||| |||||||||    
T  4765704 aaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaagaattaatgtatgtaaatgatttgtcg 4765803  T
Q  593 aaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctg 690  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||| |||| ||||| ||||||||||||||||| ||||||||||| |||||| ||||  ||    
T  4765804 aaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgcctttactttgcttttaaaaacccttttcatg 4765903  T
Q  691 tcgaaagacgcca 703  Q
    |||||||||||||    
T  4765904 tcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 483 - 678
Target Start/End: Complemental strand, 4769937 - 4769742
Alignment:
Q  483 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 582  Q
    ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| || || |||| | || ||||||||||||||||||||||||||||||     
T  4769937 agttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaagaatgtatgtaac 4769838  T
Q  583 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaa 678  Q
    | |||| ||||||||||||||||| |||||||||||||||   |||||||||| |||| || ||||||||||||||||||| ||||||||||||||    
T  4769837 gaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttgcttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 399 - 614
Target Start/End: Complemental strand, 7149005 - 7148790
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaaa 498  Q
    ||||||||||| | ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| |  || ||||| ||||  |||||||||||| |||    
T  7149005 tgggagacaagtggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaa 7148907  T
Q  499 ac-gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    || ||||| |||||  |||||||| |||||||||| | |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7148906 accgggtcacaaattgcctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 7148807  T
Q  598 cctttatttttaatgca 614  Q
    | |||| ||||||||||    
T  7148806 cttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 483 - 705
Target Start/End: Original strand, 4832516 - 4832740
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  |||| || |||||||||||||||||| |||||||||||| || ||| |  || | ||||||||||||||| ||||||| ||| |||    
T  4832516 agttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaagaatatatttaa 4832615  T
Q  582 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-c 680  Q
    ||||| ||  | ||||||||||| |||||||||||||||||||  ||||||||  |||| |||||||||||||||||| ||| || ||||||| |||| |    
T  4832616 aggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttaccttgctttaaaaacc 4832715  T
Q  681 cttttttctgtcgaaagacgccaca 705  Q
    ||||||||| |||||||||| ||||    
T  4832716 cttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 399 - 622
Target Start/End: Original strand, 9033398 - 9033622
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccatagaaa 497  Q
    ||||| ||||||| ||||||||||||| | |||| |||| ||| |||| |||||||||||  ||| | |||| ||||| ||||| |||||||||||| ||    
T  9033398 tgggatacaagcggttgtctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaa 9033495  T
Q  498 aacgggtcgcaaatcacctatacaaaattct-aaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    ||||||||||| ||| |||||||| |||| | |||||| || ||||| ||| || ||||||||  |||| ||||||||||||||||||||||||| ||||    
T  9033496 aacgggtcgcatatcgcctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaacc 9033595  T
Q  597 acctttatttttaatgca-ttgtattt 622  Q
    |||||||||||||||||| ||||||||    
T  9033596 acctttatttttaatgcacttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 399 - 611
Target Start/End: Original strand, 29614512 - 29614724
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||| |||||||| ||  ||| |  || ||||| || || ||||||||||||  ||    
T  29614512 tgggcgacaagcagttgtctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaa 29614609  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaa-aacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    || |||||||||||| |||||| | |||||||| |||| || ||||||||   | |||||||||||||||||| ||||||||||||||||||||||||||    
T  29614610 aatgggtcgcaaatcgcctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaacc 29614709  T
Q  597 acctttatttttaat 611  Q
    |||||||||||||||    
T  29614710 acctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 183 - 372
Target Start/End: Original strand, 4765286 - 4765475
Alignment:
Q  183 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 282  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  283 tgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgttggacttagcat 372  Q
    |||| |||||||| ||||| |||||||||||||||||| ||||| |||| ||||||   |||||||||| | || ||||||||||||||||    
T  4765385 tgtgatcaacattagttgacttttactcttgcaggaatcgaagttttttccttcaacttaaggagtttcgacgaaatgttggacttagcat 4765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 507 - 649
Target Start/End: Complemental strand, 23378631 - 23378488
Alignment:
Q  507 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttg-tcgaaccacctttatt 605  Q
    |||||||| ||||||||||||||||| | || ||||| ||| ||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||    
T  23378631 caaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcatacataatgtatgtaaaggatttgtttgaaccacctttatt 23378532  T
Q  606 tttaatgcattgtattttacctttcctttacgtttctgcaattt 649  Q
    ||||||||| || | |||| |||||||||| |||||| ||||||    
T  23378531 tttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 154 - 367
Target Start/End: Complemental strand, 4770307 - 4770096
Alignment:
Q  154 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 253  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgt 4770210  T
Q  254 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 353  Q
    ||||||||| ||| | ||| ||| |||||||||| ||||||| ||| | |||||  ||||||||||| | ||||||||||||||   ||||| |||  |     
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacattcgtttacttttatccttgcaggaatcgtagtcttttcttcaacataaggaattttgac 4770110  T
Q  354 gagatgttggactt 367  Q
    ||||||||||||||    
T  4770109 gagatgttggactt 4770096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 483 - 614
Target Start/End: Original strand, 16242937 - 16243069
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| || |||||||   |||||||||||||||||||||||||||||||||    
T  16242937 agttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaatgtatgtaa 16243036  T
Q  582 aggatttgtcgaaccacctttatttttaatgca 614  Q
    || |||||||||||||| |||||||||||||||    
T  16243037 agcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 24698727 - 24698845
Alignment:
Q  252 gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttca 351  Q
    |||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||||||||||||||   ||||||||||     
T  24698727 gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcg 24698826  T
Q  352 aagagatgttggacttagc 370  Q
    | |||||||| ||||||||    
T  24698827 acgagatgttagacttagc 24698845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 15687420 - 15687340
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 331  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtctttt 15687340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 16242605 - 16242699
Alignment:
Q  253 ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttttcttcaatcaaaggag 346  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||  ||||||||||| |||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggag 16242699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 29614037 - 29614155
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagttt 349  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| ||||  ||| | |||||||||| | |||||| ||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggag-tt 29614135  T
Q  350 caaagagatgttggacttag 369  Q
    | | ||||||| ||||||||    
T  29614136 cgacgagatgtaggacttag 29614155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 522 - 645
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  522 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 621  Q
    |||||||| |||| |||||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| |||||| ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  622 ttacctttcctttacgtttctgca 645  Q
    |||  ||| ||||| |||||||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 372
Target Start/End: Original strand, 4832190 - 4832300
Alignment:
Q  264 tttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgtt 361  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||  |||| |||||||| |||||||||| ||| ||    ||||||||  | ||||||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtctttttcttgaacttgaggagttttgacgagatgtt 4832289  T
Q  362 ggacttagcat 372  Q
    |||||||||||    
T  4832290 ggacttagcat 4832300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 645
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  571 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 645  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 645
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  571 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 645  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 640
Target Start/End: Complemental strand, 13409879 - 13409833
Alignment:
Q  594 accacctttatttttaatgcattgtattttacctttcctttacgttt 640  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13409879 accacctttatttttaatgcaatgcattttacctttcctttaagttt 13409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 13428406 - 13428488
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 334  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| ||||| |||  || ||||| |||| ||||| |||||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttgactttatct-ttgcatgaatcgaagtgttttctt 13428488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 6e-76; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 477 - 705
Target Start/End: Original strand, 22397548 - 22397777
Alignment:
Q  477 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatg 574  Q
    |||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||||||||||| ||||||||||||||    
T  22397548 aataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaagaatg 22397647  T
Q  575 tatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcc-tttacgtttctgcaatttaaacttaatgccttaactttgctt 673  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    ||||| |||    
T  22397648 tatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agacttttctt 22397745  T
Q  674 ttaaaaccttttttctgtcgaaagacgccaca 705  Q
    |||||||||||||| |||||||||||||||||    
T  22397746 ttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 399 - 614
Target Start/End: Complemental strand, 16177519 - 16177304
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 497  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| | ||| | ||| ||||| ||||  ||||||||||| | ||    
T  16177519 tgggagacaagcggttgtctacatggaaggagtgctgattgtgggattagtttctttcc-acttattttctatgtataaatattagttttccatatggaa 16177421  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||      ||||||||||||||||||||||||||||||||||||| ||||||||    
T  16177420 aacgggtcgcaaataacctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaacca 16177321  T
Q  598 cctttatttttaatgca 614  Q
    | |||||||||||||||    
T  16177320 catttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 154 - 367
Target Start/End: Complemental strand, 17525444 - 17525233
Alignment:
Q  154 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 253  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  254 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 353  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| |  |||||| |||| |||||||||||   ||| ||||||||     
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttactcctctaggaatcgaagccttttcttcaacttaagaagtttcaac 17525247  T
Q  354 gagatgttggactt 367  Q
    |||||||| |||||    
T  17525246 gagatgttagactt 17525233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 398 - 610
Target Start/End: Complemental strand, 15830238 - 15830026
Alignment:
Q  398 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaa 496  Q
    ||||||||||| |  ||||||||||||||  |||||| ||| ||||||| |||||||||||  ||| | ||| ||||| ||||| |||||| |||| | |    
T  15830238 atgggagacaaacagttgtctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataagga 15830140  T
Q  497 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||| | | | ||||||||||||||||||| |||||||||||| ||||||||||| |    
T  15830139 aaacgggtcgcaaatcgcctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatc 15830040  T
Q  597 acctttatttttaa 610  Q
    || |||||||||||    
T  15830039 acttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 496 - 696
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  496 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 595  Q
    ||||| |||||||||||||||||||| |||||||||||| || |||| | || | ||||||||||||||||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  596 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 693  Q
     |||||||||||||||||||| || ||||  ||| ||||| |||||| ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  694 aaa 696  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 483 - 614
Target Start/End: Original strand, 1177214 - 1177349
Alignment:
Q  483 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaaga----atgtatg 578  Q
    |||||| ||||| ||||| || ||||||||| ||||||| |||||||||||| || ||||||  | |||||||||||||||||||||||    |||||||    
T  1177214 agttttgcataggaaaacaggacgcaaatcatctatacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatg 1177313  T
Q  579 taaaggatttgtcgaaccacctttatttttaatgca 614  Q
    ||||||||||||||||||||||||||||||||||||    
T  1177314 taaaggatttgtcgaaccacctttatttttaatgca 1177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 31125745 - 31125872
Alignment:
Q  184 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 283  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  284 gtggtcaacattggttgatttttactctt 312  Q
    |||||||||||| ||||| ||||||||||    
T  31125844 gtggtcaacattagttgacttttactctt 31125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 522 - 655
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  522 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 621  Q
    |||||||| |||| |||||||||||   |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  622 ttacctttcctttacgtttctgcaatttaaactt 655  Q
    ||| | || ||||| ||||||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 522 - 655
Target Start/End: Original strand, 17947890 - 17948023
Alignment:
Q  522 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 621  Q
    |||||||| ||||||| ||||| ||| || |||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || || | |    
T  17947890 aaattctacaacattcgaagtaacggcgcaagaggaaagagttatataaaatgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaat 17947989  T
Q  622 ttacctttcctttacgtttctgcaatttaaactt 655  Q
    ||| |||||||||| |||| |||| ||| |||||    
T  17947990 ttatctttcctttaagtttatgcatttttaactt 17948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 550 - 655
Target Start/End: Original strand, 14762985 - 14763090
Alignment:
Q  550 cgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 649  Q
    |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||| || | |||| |||| ||||| ||||||||| |||    
T  14762985 cgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttctgcacttt 14763084  T
Q  650 aaactt 655  Q
     |||||    
T  14763085 taactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 157 - 331
Target Start/End: Original strand, 22394009 - 22394179
Alignment:
Q  157 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 256  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  257 ctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 331  Q
     ||||| ||||||||||||  |||||||||||||||||| |||   ||||||||||||||||||  |||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaatcaaagtctttt 22394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 399 - 665
Target Start/End: Original strand, 31126065 - 31126351
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||||| ||||||||||||||| |||||| ||  ||||||| |||||||||||  ||| |  || ||||| ||||| |||||||| |||  ||    
T  31126065 tgggagacaagcgattgtctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaa 31126163  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataa------------agaatgtatgtaaagga 585  Q
    |||||||| |||||| ||||||   |||||||||||| || ||||| |   || |||||||||||||||||            | |||||||||||||||    
T  31126164 aacgggtctcaaatctcctatatggaattctaaaacactcgaagtaacaacgcaagagaaaagagtcataaatctcatattttaaaatgtatgtaaagga 31126263  T
Q  586 tttgtcgaaccacctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaattt-aaacttaatgccttaa 665  Q
    |||| |||||||||||||||| |||||||       |||||||||  |||| ||||  ||||||||||||| ||||||||||| ||||    
T  31126264 tttgccgaaccacctttatttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcattaa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
Q  251 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttc 335  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||||||| ||||||  |||||||||||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc 16177672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 1176918 - 1176994
Alignment:
Q  292 cattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttag 369  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  1176918 cattagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggag-ttcaacgagatgttggatttag 1176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 653
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 650  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||   |||||||| |||| ||||||||| ||||| ||||||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  651 aac 653  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 13002854 - 13002906
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 603  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  13002854 agagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 262 - 348
Target Start/End: Complemental strand, 32784534 - 32784447
Alignment:
Q  262 attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtc-ttttcttcaatcaaaggagtt 348  Q
    ||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| || |||||| ||||||| ||||||    
T  32784534 attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagtt 32784447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 640
Target Start/End: Complemental strand, 25945916 - 25945846
Alignment:
Q  570 gaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 640  Q
    |||||||||||||  ||||||| || |||||||||||||||||||| || ||||||||| ||||||| ||||    
T  25945916 gaatgtatgtaaactgatttgtaga-ccacctttatttttaatgcaatgcattttacctctcctttaagttt 25945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 554 - 603
Target Start/End: Original strand, 24154179 - 24154229
Alignment:
Q  554 agaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 603  Q
    |||||||||||||| | ||||||||||||  ||||||||||||||||||||    
T  24154179 agaaaagagtcatacaaaatgtatgtaaactgatttgtcgaaccaccttta 24154229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 596
Target Start/End: Original strand, 10163272 - 10163317
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaacc 596  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  10163272 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaacc 10163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 4e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 471 - 705
Target Start/End: Complemental strand, 11361830 - 11361595
Alignment:
Q  471 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 569  Q
    ||||| |||||||||||||| |||  ||||| ||||| | |||||||||||| |||||||||||| || |  |||||  ||||| ||||||||| | |||    
T  11361830 tgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaacactcgacttaccgacgcgagggaaaagagttacaaa 11361731  T
Q  570 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||    
T  11361730 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcatttaaatttctgcaatttaaacttaatgcctttacttt 11361631  T
Q  670 gcttttaaaaccttttttctgtcgaaagacgccaca 705  Q
    ||||||||||| ||||| ||||| |||||| |||||    
T  11361630 gcttttaaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 497 - 698
Target Start/End: Original strand, 9409168 - 9409370
Alignment:
Q  497 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    |||||||||||||||||| |||| | |||||||||||| || ||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||    
T  9409168 aaacgggtcgcaaatcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaacc 9409267  T
Q  597 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaa 695  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| |    
T  9409268 acctttatttttaatgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgta 9409367  T
Q  696 aga 698  Q
    |||    
T  9409368 aga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 250 - 393
Target Start/End: Complemental strand, 11362160 - 11362017
Alignment:
Q  250 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 349  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||||||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagttt 11362061  T
Q  350 caaagagatgttggacttagcattgaaaagtctcgaagccttaa 393  Q
    ||| |||||||||||||||||||  |||| ||||||||||||||    
T  11362060 caacgagatgttggacttagcatgaaaaattctcgaagccttaa 11362017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 483 - 655
Target Start/End: Complemental strand, 16675259 - 16675086
Alignment:
Q  483 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| || ||||||||| ||||||||| ||||| ||| |||||||||||||    
T  16675259 agttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacagaatgtatgtaa 16675161  T
Q  582 ag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    |  ||||||||||||||| |||||||| |||||| |  | ||||||||| ||||| ||||||||| |||||||||    
T  16675160 aatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 552 - 614
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 614  Q
    |||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 483 - 655
Target Start/End: Complemental strand, 4697626 - 4697454
Alignment:
Q  483 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| |||||| ||||| | ||||||| | ||| ||| | |||||||||||    
T  4697626 agttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttatacaaaatgtatgtaa 4697528  T
Q  582 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
       |||| |||||||||||||||  ||||||||| |  | ||||||||| ||||| |||| |||  |||||||||    
T  4697527 tctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtttatgcgttttaaactt 4697454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 640
Target Start/End: Original strand, 18558469 - 18558516
Alignment:
Q  593 aaccacctttatttttaatgcattgtattttacctttcctttacgttt 640  Q
    |||||||||||||||||||||| || ||||||| ||||||||| ||||    
T  18558469 aaccacctttatttttaatgcaatgcattttacatttcctttaagttt 18558516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 26654144 - 26654195
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttt 602  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  26654144 agagaaaagagtcatacataatgtatgtaatatgatttgtcgaaccaccttt 26654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  217 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 295  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 9e-66; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 399 - 660
Target Start/End: Complemental strand, 20146437 - 20146169
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 497  Q
    ||||||||||| | |||||||||| |||| |||| |||| |||||| | |||||||||||| ||| |  |||||||| ||||||||||||||||| | ||    
T  20146437 tgggagacaagtgattgtctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaa 20146338  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | | ||||    
T  20146337 aatgggtcgcaaatcacctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggacca 20146239  T
Q  598 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgc 660  Q
     ||||||||||||||||       || |||||| ||||| ||||| ||||||||||||||||||||||||    
T  20146238 tctttatttttaatgcacttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 399 - 679
Target Start/End: Original strand, 11013745 - 11014027
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||||||    | ||||||  |   | ||| |||||  ||| |||||||||||||  ||    
T  11013745 tgggagacaagtggttgtctacatggaagaagtgctgatcgtgggattgtactttttccagttatttttctatgtatatataggagttttccataggtaa 11013844  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    || |||| ||||||||||||||||||||| ||||||| || || |||| |   ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  11013845 aatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaagaatatatgtaaaggatttgtcgagcca 11013944  T
Q  598 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgcttttaaaa 679  Q
    |||||||||||||||||||||| ||||  ||||||||| ||||| | || ||||||||||||||||| |||||||||||||||    
T  11013945 cctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactttgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 399 - 649
Target Start/End: Complemental strand, 33103273 - 33103021
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-- 495  Q
    ||||||||||| | ||||||||||||||| |||| |||||||||||||    | ||||||  ||| | |  | ||||| ||||  ||||||||||||       
T  33103273 tgggagacaagtggttgtctacatggaagaagtgttgattgtgggattatgctttttccag-ttattttggtatgtataaatagtagttttccatagggg 33103175  T
Q  496 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 595  Q
    ||||| |||||||||||||||||||| |||||||||||| || ||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||    
T  33103174 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatatagaatgtatgtaaaggatttgtcgaac 33103075  T
Q  596 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 649  Q
     || ||||||||||||||| || | |||| |||||||||| |||||||||||||    
T  33103074 tacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 254 - 391
Target Start/End: Complemental strand, 20146686 - 20146549
Alignment:
Q  254 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 353  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| ||||||||||  ||||||  ||||||||| |     
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgac 20146587  T
Q  354 gagatgttggacttagcattgaaaagtctcgaagcctt 391  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20146586 gagatgttggacttagcattgaaaagtctcgaagcctt 20146549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 11013493 - 11013614
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 350  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||||||||||   ||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc 11013592  T
Q  351 aaagagatgttggacttagcat 372  Q
     | |||||||||||||||||||    
T  11013593 gacgagatgttggacttagcat 11013614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 483 - 655
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  483 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| || ||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  582 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    ||||||||||||||||||||||||||||||||| || | || | |||| ||||| ||||||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 484 - 611
Target Start/End: Original strand, 20150435 - 20150563
Alignment:
Q  484 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 582  Q
    |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| || ||||||||  ||||||||||| ||||||| | |||| ||| |||    
T  20150435 gttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcatacaaaatgcatgcaaa 20150534  T
Q  583 ggatttgtcgaaccacctttatttttaat 611  Q
    ||||||||| |||||||||||||||||||    
T  20150535 ggatttgtcaaaccacctttatttttaat 20150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 139 - 332
Target Start/End: Original strand, 22619579 - 22619770
Alignment:
Q  139 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 238  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  239 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 332  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| ||||| |||||   |||||||||| |||||||||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttttc 22619770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 485 - 635
Target Start/End: Original strand, 22607834 - 22607984
Alignment:
Q  485 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 583  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| || ||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  584 gatttgtcgaaccacctttatttttaatgcattgtattttacctttccttta 635  Q
    ||| ||  ||||||||||||||||||||||| |||| |||| ||||||||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttccttta 22607984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 399 - 611
Target Start/End: Original strand, 13201980 - 13202192
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtat-ctttgtattaataagagttttccatag-aa 496  Q
    ||||||||||||| ||||||| ||||||| ||||||||| ||||  || |  | ||||||  ||| | | || ||||| ||||  |||||| ||||| ||    
T  13201980 tgggagacaagcggttgtctaaatggaagaagtgctgatcgtggagttaggctttttccag-ttattttgctatgtataaatagtagtttttcataggaa 13202078  T
Q  497 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    ||||  |||||||||||| |||| ||| ||||| |||| || || |||||| ||||||||||| ||| ||| | ||||||||||||||||||||||||||    
T  13202079 aaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttatacataatgtatgtaaaggatttgtcgaacc 13202177  T
Q  597 acctttatttttaat 611  Q
    |||||||||||||||    
T  13202178 acctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 483 - 641
Target Start/End: Complemental strand, 17615430 - 17615272
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| || |||||| || | |||| |||||||| | | | |||||||||||    
T  17615430 agttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataatgtatgtaa 17615332  T
Q  582 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttc 641  Q
    |||||||||||||| ||||||||||| |||||| || | || |||||| ||||| |||||    
T  17615331 aggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtttc 17615272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 612
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  522 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatg 612  Q
    |||||||| |||| || ||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||||||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 655
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  583 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    ||||||||||||||||||||||||||||||||    | |||| |||| ||||| ||||||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 534
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  471 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 534  Q
    ||||| ||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 633
Target Start/End: Complemental strand, 20886610 - 20886571
Alignment:
Q  594 accacctttatttttaatgcattgtattttacctttcctt 633  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  20886610 accacctttatttttaatgcaatgcattttacctttcctt 20886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 603
Target Start/End: Complemental strand, 23455242 - 23455191
Alignment:
Q  553 gagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 603  Q
    ||||||||||||||| | ||||||||||| | ||||||||||||||||||||    
T  23455242 gagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccaccttta 23455191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 17615766 - 17615684
Alignment:
Q  250 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 332  Q
    ||||||||  ||| ||||| ||| ||||||||||| |||||||||| ||||| |||||   |||||||||| ||| |||||||    
T  17615766 ttgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgacttttatctttgcaggaatcgaaatcttttc 17615684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 399 - 660
Target Start/End: Original strand, 5582 - 5851
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 497  Q
    ||||||||||||| ||||||| ||||||| |||| |||| |||||||| ||||| |||||| ||| |  |||||||| ||||||||||||| ||||  ||    
T  5582 tgggagacaagcggttgtctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaa 5681  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    ||||||||| |||||||||||||| |||||||||||  |  ||||||||   ||||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  5682 aacgggtcgtaaatcacctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggacca 5781  T
Q  598 cctttatttttaatgca-ttg------tattttacctttcctttacgtttctgcaatttaaacttaatgc 660  Q
    ||||||||||||||||| |||      |||||| ||||| ||||| |||| |||||||||||||||||||    
T  5782 cctttatttttaatgcacttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 258 - 391
Target Start/End: Original strand, 5337 - 5470
Alignment:
Q  258 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 357  Q
    |||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || ||||| ||||| |||||  ||| | |||| | ||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaattgaagaattttcgacgaga 5436  T
Q  358 tgttggacttagcattgaaaagtctcgaagcctt 391  Q
    |||||||||||||||  |||||||||||||||||    
T  5437 tgttggacttagcatcaaaaagtctcgaagcctt 5470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 399 - 705
Target Start/End: Complemental strand, 21097 - 20793
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaa- 497  Q
    ||||||||||||| ||||| ||||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||| ||||  ||| ||||||||  |     
T  21097 tgggagacaagcggttgtcaacatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggac 20999  T
Q  498 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 597  Q
    || |||||||||||||| |||| | |||||||||||| |  ||||||     |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  20998 aatgggtcgcaaatcacgtata-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaacca 20900  T
Q  598 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 697  Q
    |||||||||| ||||||||| |||||  |||||||||| ||||||||| |||||||||||||| || |   | ||||||||||| |||||||||| ||||    
T  20899 cctttattttaaatgcattgcattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaag 20801  T
Q  698 acgccaca 705  Q
    ||||||||    
T  20800 acgccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 372
Target Start/End: Complemental strand, 21337 - 21225
Alignment:
Q  261 tattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagtttcaaagagatg 359  Q
    ||||||||||| ||||||||||| || |||||||| ||||| ||||| | ||||| |||| ||||   |||||||||| | || ||||||| | ||||||    
T  21337 tattttcaccatcctcatttaatatgatcaacatttgttgacttttatttttgcaagaatcgaagcatttttcttcaaccgaaagagtttcgacgagatg 21238  T
Q  360 ttggacttagcat 372  Q
    ||||||| |||||    
T  21237 ttggactaagcat 21225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 655
Target Start/End: Original strand, 374041 - 374294
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattc-gtttctttccaaattagtat-ctttgtattaataagagttttccatagaa 496  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| ||||  | || ||||  | ||| | | || ||||| ||||  ||||||||||||      
T  374041 tgggagacaagcggttgtctacatggaagaagtgctgatcgtgagattttgcttttttc--agttattttgctatgtataaatagtagttttccataggg 374138  T
Q  497 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 596  Q
    |||  ||||||||||||| |||| ||| | ||| |||| ||||||||| || ||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  374139 aaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaaaatgtatgtaaagtatttgtcgaacc 374236  T
Q  597 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    |||||||||||||||||| || | |||| |||||||||| |||| |||||||| |||||    
T  374237 acctttatttttaatgcaatgcaatttatctttccttta-gtttttgcaattttaactt 374294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 373696 - 373847
Alignment:
Q  154 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 253  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  254 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 307  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| ||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta 373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 9e-29; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 483 - 655
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| || | ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  582 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 655  Q
    ||||||||||||||||||||||||||||| ||| || | |||| | || ||||| ||||||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 655
Target Start/End: Complemental strand, 4661 - 4546
Alignment:
Q  540 agtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtt 639  Q
    |||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||||||||||||||||| ||| || | ||||   || ||||| |||    
T  4661 agtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaaccacctttatttttaaagcaatgcaatttattatttctttaagtt 4562  T
Q  640 tctgcaatttaaactt 655  Q
    |||||| ||| |||||    
T  4561 tctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 251 - 395
Target Start/End: Original strand, 5725 - 5869
Alignment:
Q  251 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 350  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||  |||||||||||| |||| |||||| ||| | |||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttttcctcagttaaaggagtttc 5824  T
Q  351 aaagagatgttggacttagcattgaaaagtctcgaagccttaaag 395  Q
    || |||||||| ||||||||||  ||||| || |||||| |||||    
T  5825 aacgagatgttagacttagcatgaaaaagccttgaagccctaaag 5869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 459
Target Start/End: Original strand, 5971 - 6031
Alignment:
Q  399 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaa 459  Q
    ||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||||||    
T  5971 tgggagacaagcggttgcctacatggaacgagtgctgatcgtgggattagtttctttccaa 6031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 583
Target Start/End: Complemental strand, 13092 - 12991
Alignment:
Q  483 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 581  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  13092 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 12993  T
Q  582 ag 583  Q
    ||    
T  12992 ag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 258 - 370
Target Start/End: Complemental strand, 5388 - 5276
Alignment:
Q  258 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtcttttcttcaatcaaaggagtttcaaagag 356  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||||||||  |||||||||||||||   |||||| ||||| |||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta-tcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgag 5290  T
Q  357 atgttggacttagc 370  Q
    ||||||||||||||    
T  5289 atgttggacttagc 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 471 - 624
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  471 tgtattaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 569  Q
    ||||| ||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| || ||||||||| ||||||||||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  570 gaatgtatgt-aaaggatttgtcgaaccacctttatttttaatgcattgtatttta 624  Q
     ||||||||| |||  ||||||| ||||||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 607
Target Start/End: Original strand, 871 - 996
Alignment:
Q  483 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-a 580  Q
    ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| |||||| | |||||| ||| | ||||||||| |    
T  871 agttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttatacataatgtatgtaa 969  T
Q  581 aaggatttgtcgaaccacctttatttt 607  Q
    || ||||||| |||| |||||||||||    
T  970 aatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 655
Target Start/End: Original strand, 26930 - 27031
Alignment:
Q  552 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 650  Q
    |||||||||||||||| | |||||||||||    |||||||||||||||||||  ||||||||| || | |||| |||| ||||| ||||||||  ||||    
T  26930 agagaaaagagtcatacataatgtatgtaatctaatttgtcgaaccaccttta--tttaatgcaatgcaatttatcttttcttta-gtttctgcgtttta 27026  T
Q  651 aactt 655  Q
    |||||    
T  27027 aactt 27031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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