View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3949_high_25 (Length: 292)

Name: NF3949_high_25
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3949_high_25
NF3949_high_25
[»] chr5 (5 HSPs)
chr5 (17-204)||(4750893-4751080)
chr5 (17-204)||(4741628-4741816)
chr5 (18-93)||(4759262-4759337)
chr5 (239-277)||(4741817-4741855)
chr5 (239-277)||(4751081-4751119)
[»] chr7 (1 HSPs)
chr7 (106-177)||(13583616-13583687)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 4750893 - 4751080
Alignment:
Q  17 attacctacctgccaattgcaaggcctacagataattgtcttgcaagaattataaaagtaacataaatcatgggattgttctgtctctattcttgtcaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4750893 attacctacctgccaattgcaaggcctacagataattgtcttgcaagaattataaaagtaacataaatcatgggattgttctctctctattcttgtcaat 4750992  T
Q  117 gctcttggagttcttcgcctaagatcgtagtttttgctttgttttgtcctttcttcttgattnnnnnnnntaaggccaagtcataggg 204  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||        ||||||||||||||||||    
T  4750993 gctcttggagttcttcgcctaagatcgtagtttttactttattttgtcctttcttcttgattaaaaaaaataaggccaagtcataggg 4751080  T

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Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 4741628 - 4741816
Alignment:
Q  17 attacctacctgccaattgcaaggcctacagataatt-gtcttgcaagaattataaaagtaacataaatcatgggattgttctgtctctattcttgtcaa 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4741628 attacctacctgccaattgcaaggcctacagataatttgtcttgcaagaattataaaagtaacataaatcatgggattgttctgtctctattcttgtcaa 4741727  T
Q  116 tgctcttggagttcttcgcctaagatcgtagtttttgctttgttttgtcctttcttcttgattnnnnnnnntaaggccaagtcataggg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||    
T  4741728 tgctcttggagttcttcgcctaaaatcgtagtttttgctttattttgtcctttcttcttgattaaaaaaaataaggccaagtcataggg 4741816  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 4759262 - 4759337
Alignment:
Q  18 ttacctacctgccaattgcaaggcctacagataattgtcttgcaagaattataaaagtaacataaatcatgggatt 93  Q
    |||||||||||||| |  ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4759262 ttacctacctgccagtgccaaggcctaaagataattgccttgcaagaattataaaagtaacataaatcatgggatt 4759337  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 4741817 - 4741855
Alignment:
Q  239 ttttggaacacaattttttaacacaaaagttgacactct 277  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4741817 ttttggaacacaattttttaacacaaaagttgacactct 4741855  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 4751081 - 4751119
Alignment:
Q  239 ttttggaacacaattttttaacacaaaagttgacactct 277  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4751081 ttttggaacacaattttttaacacaaaagttgacactct 4751119  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 13583616 - 13583687
Alignment:
Q  106 ttcttgtcaatgctcttggagttcttcgcctaagatcgtagtttttgctttgttttgtcctttcttcttgat 177  Q
    ||||| || ||| ||||||||||  |||||||| || ||||||||| |||||||||||||||||||||||||    
T  13583616 ttcttttcgatgttcttggagttgatcgcctaatattgtagtttttactttgttttgtcctttcttcttgat 13583687  T

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