View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_high_33 (Length: 250)
Name: NF3949_high_33
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26153720 - 26153956
Alignment:
| Q |
1 |
cattctataggtactacagagtacagtgcatatgattaatttgaaatgttacctccatatgcaatgttgtcaaataggagctatagcggtgctgcaagcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26153720 |
cattctataggtactacagagtacagtgcatatgattaatttgaaatgttacctccatatgcaatgttgtcaaataggagctataacggtgctgcaagcc |
26153819 |
T |
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| Q |
101 |
tacaacttagcgtaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgttgcgtatagaagaatttgaacagattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |
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| T |
26153820 |
tacaacttagcgtaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtataaaaggatttgaacagattg |
26153919 |
T |
|
| Q |
201 |
ttatttactacaatccatacctgacaacattgttcct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26153920 |
ttatttactacaatccatacctgacaacattgttcct |
26153956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26167018 - 26167254
Alignment:
| Q |
1 |
cattctataggtactacagagtacagtgcatatgattaatttgaaatgttacctccatatgcaatgttgtcaaataggagctatagcggtgctgcaagcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26167018 |
cattctataggtactacagagtacagtgcatatgattaatttgaaatgttacctccatatgcaatgttgtcaaataggagctataacggtgctgcaagcc |
26167117 |
T |
|
| Q |
101 |
tacaacttagcgtaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgttgcgtatagaagaatttgaacagattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |
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| T |
26167118 |
tacaacttagcgtaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtataaaaggatttgaacagattg |
26167217 |
T |
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| Q |
201 |
ttatttactacaatccatacctgacaacattgttcct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26167218 |
ttatttactacaatccatacctgacaacattgttcct |
26167254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 26158773 - 26158910
Alignment:
| Q |
100 |
ctacaacttagcgtaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgttgcgtatagaagaatttgaacagatt |
199 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26158773 |
ctacaacttagcgcaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtatagaagaatttgaacagatt |
26158872 |
T |
|
| Q |
200 |
gttatttactacaatccatacctgacaacattgttcct |
237 |
Q |
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||||||||| |||||||||||||||||||||| |||| |
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| T |
26158873 |
tttatttactgcaatccatacctgacaacattgctcct |
26158910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 26172071 - 26172208
Alignment:
| Q |
100 |
ctacaacttagcgtaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgttgcgtatagaagaatttgaacagatt |
199 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26172071 |
ctacaacttagcgcaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtatagaagaatttgaacagatt |
26172170 |
T |
|
| Q |
200 |
gttatttactacaatccatacctgacaacattgttcct |
237 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||| |
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|
| T |
26172171 |
tttatttactgcaatccatacctgacaacattgctcct |
26172208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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