View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3949_high_36 (Length: 243)
Name: NF3949_high_36
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_high_36 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 10069079 - 10068885
Alignment:
| Q |
1 |
atggaagcattgaagatgaagcaattttttgctatggttgtagtggccatgatgatggcagcatcaagtgtttcagctgcagatgcaccagctccaagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10069079 |
atggaagcattgaagatgaagcaattttttgctatgctggtagtggccatgatgatggcagcatcaagtgtttcagctgcagatgcaccagctccaagtc |
10068980 |
T |
|
| Q |
101 |
caacatcagatgctactactctctttgtcccaacaataattgcttcctttgttgctcttgtctttggacttcttttctaaatttatcaacaatga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10068979 |
caacatcagatgctactactctctttgtcccaacaataattgcttcctttgttgctcttgtctttggacttcttttctaaatttatcaacaatga |
10068885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 10106837 - 10106643
Alignment:
| Q |
1 |
atggaagcattgaagatgaagcaattttttgctatggttgtagtggccatgatgatggcagcatcaagtgtttcagctgcagatgcaccagctccaagtc |
100 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10106837 |
atggaggcattgaagatgaatcaaatttttgctatggtggtagtggtcatgatgatggcagcatcaagtgtttcagctgcagatgcaccagctccaagtc |
10106738 |
T |
|
| Q |
101 |
caacatcagatgctactactctctttgtcccaacaataattgcttcctttgttgctcttgtctttggacttcttttctaaatttatcaacaatga |
195 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10106737 |
ctacatcagatgctactactctctttgttccaactataattgcttcctttgttgctcttctttttggacttcttttctaaatttatcaacaatga |
10106643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 10068844 - 10068809
Alignment:
| Q |
191 |
aatgagtatttacaattaccattattatgtacattg |
226 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10068844 |
aatgagtatttacaattaccattcttatgtacattg |
10068809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 33252908 - 33252974
Alignment:
| Q |
68 |
gtgtttcagctgcagatgcaccagctccaagtccaacatcagatgctactactctctttgtcccaac |
134 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || |||||||| || || ||||| ||||| |
|
|
| T |
33252908 |
gtgtttcagctgctgatgcaccagctccaagtccaacttctgatgctaccacactttttgttccaac |
33252974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University