View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3949_high_38 (Length: 239)

Name: NF3949_high_38
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3949_high_38
NF3949_high_38
[»] chr1 (5 HSPs)
chr1 (15-231)||(46466211-46466427)
chr1 (15-231)||(46471416-46471632)
chr1 (15-231)||(46451821-46452037)
chr1 (15-231)||(46344519-46344735)
chr1 (15-231)||(46462789-46463005)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 46466427 - 46466211
Alignment:
Q  15 aacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactca 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46466427 aacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactca 46466328  T
Q  115 acactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46466327 acactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaaca 46466228  T
Q  215 aaccctgcccctttgct 231  Q
    |||||||||| ||||||    
T  46466227 aaccctgcccttttgct 46466211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 46471632 - 46471416
Alignment:
Q  15 aacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactca 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46471632 aacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactca 46471533  T
Q  115 acactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46471532 acactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaaca 46471433  T
Q  215 aaccctgcccctttgct 231  Q
    |||||||||| ||||||    
T  46471432 aaccctgcccttttgct 46471416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 46452037 - 46451821
Alignment:
Q  15 aacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactca 114  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |||||||||||| ||||||    
T  46452037 aacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactca 46451938  T
Q  115 acactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaaca 214  Q
    |||||||||||||  || ||||||| ||||||||||| || |||||||||||||||   |||||||||||| ||||||||||||||||||||||| ||||    
T  46451937 acactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaaca 46451838  T
Q  215 aaccctgcccctttgct 231  Q
    ||||||| || ||||||    
T  46451837 aaccctgtccttttgct 46451821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 46344519 - 46344735
Alignment:
Q  15 aacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactca 114  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |||||||||||| ||||||    
T  46344519 aacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactca 46344618  T
Q  115 acactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaaca 214  Q
    |||||||||||||  || ||||||| ||||||||||| || |||||||||||||||   |||||||||||| ||||||||||||||||||||||| ||||    
T  46344619 acactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaaca 46344718  T
Q  215 aaccctgcccctttgct 231  Q
    ||||||| || ||||||    
T  46344719 aaccctgtccttttgct 46344735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 46463005 - 46462789
Alignment:
Q  15 aacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgacttagactca 114  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |||||||||||| ||||||    
T  46463005 aacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactca 46462906  T
Q  115 acactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaaca 214  Q
    |||||||||||||  || ||||||| ||||||||||| || |||||||||||||||   |||||||||||| ||||||||||||||||||||||| ||||    
T  46462905 acactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaaca 46462806  T
Q  215 aaccctgcccctttgct 231  Q
    ||||||| || ||||||    
T  46462805 aaccctgtccttttgct 46462789  T

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