View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3949_high_39 (Length: 238)

Name: NF3949_high_39
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3949_high_39
NF3949_high_39
[»] chr2 (1 HSPs)
chr2 (19-228)||(1529713-1529922)
[»] chr7 (1 HSPs)
chr7 (173-228)||(10026462-10026517)
[»] chr4 (2 HSPs)
chr4 (173-222)||(22202951-22203000)
chr4 (156-212)||(26183662-26183718)
[»] chr8 (2 HSPs)
chr8 (80-147)||(22573080-22573150)
chr8 (173-225)||(32889976-32890028)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 1529922 - 1529713
Alignment:
Q  19 acattcccatatgttactgtaccgcttcacaatgggagaatatattaaaccttaacggcatgtttggtgcgcatgataacgggacaggatatgattggat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  1529922 acattcccatatgttactgtaccgcttcacaatgggagaatatattaaaccttaacagcatgtttggtgcgcatgataacgggacaggatatgattagat 1529823  T
Q  119 tatatcctgactcaatccgctgtttggtgtactaaccgtttgatgtactaaccggaaatgataagtttaacttatttttaatcatatcctactcctcctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529822 tatatcctgactcaatccgctgtttggtgtactaaccgtttgatgtactaaccggaaatgataagtttaacttatttttaatcatatcctactcctcctt 1529723  T
Q  219 tgttgttctt 228  Q
    ||||||||||    
T  1529722 tgttgttctt 1529713  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 10026462 - 10026517
Alignment:
Q  173 gaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttctt 228  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  10026462 gaaatgataagtttaacctatttctaatcatatcccactcctcctttgttattctt 10026517  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 22202951 - 22203000
Alignment:
Q  173 gaaatgataagtttaacttatttttaatcatatcctactcctcctttgtt 222  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| ||||||    
T  22202951 gaaatgataagtttaacctatttttaatcctatcctacccctcttttgtt 22203000  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 26183662 - 26183718
Alignment:
Q  156 gtttgatgtactaaccggaaatgataagtttaacttatttttaatcatatcctactc 212  Q
    |||||||| || ||| |||||||||||||||||| ||||| ||||| ||||||||||    
T  26183662 gtttgatgcaccaacaggaaatgataagtttaacatatttctaatcctatcctactc 26183718  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 22573080 - 22573150
Alignment:
Q  80 gtttggtgcgcatgataacgggacaggatatgattggatta---tatcctgactcaatccgctgtttggtg 147  Q
    |||||||||||||||||| | |||| ||||||||| || ||   ||||||||||||||||| |||||||||    
T  22573080 gtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtg 22573150  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 32889976 - 32890028
Alignment:
Q  173 gaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgtt 225  Q
    ||||||||||||||||| ||||| ||||| ||||| ||| |||||||||||||    
T  32889976 gaaatgataagtttaacctatttctaatcctatcccacttctcctttgttgtt 32890028  T

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