View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3949_high_4 (Length: 514)
Name: NF3949_high_4
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 500
Target Start/End: Original strand, 5545557 - 5546056
Alignment:
| Q |
3 |
cataggtgtgcatgtaacatttttgtcccactttctccttataataatttgattcctctaaaacatacatcattaaaccnnnnnnntaattaataaaata |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5545557 |
cataggtgtgcatgtaacatttttgtcccactttatccttataataatttgattcatctaaaacatacaccattaaaccaaaaaaataattaataaaata |
5545656 |
T |
|
| Q |
103 |
taaagctgccatatgagtatgtatctagtagtttctatctgatgtatgaaatgnnnnnnnnnnnnnnn--aactttataaatacccaattctatgtccac |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5545657 |
taaagatgccatatgagtatgtatctagtagtttctatcagatgtatgaaatgtttttttttttttttttaactttataaatacccaattctatgtccac |
5545756 |
T |
|
| Q |
201 |
tttgctttttatttattttgtgatatcttcttctagttgaaataagtnnnnnnnnnnnnnnnnnnnnnnncatcaagagctagctgaaacatctctcttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5545757 |
tttgctttttatttattttgtgatatcttcttctagttgaaataagtagaaaaaagagaaaagaaaaaaacatcaagagctagctgaaacatctctcttc |
5545856 |
T |
|
| Q |
301 |
tgttgtaaccttaattatattctccttttgtttcctcacacaaaggttagtgtgaacaaaacattgaaacacatcttttgaaatccattctcactgcttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5545857 |
tgttgtaaccttaattatattctccttttgtttcctcacacaaaggttagtgtgaacaaaacattgaaacacatcttttgaaatccattctcactgcttc |
5545956 |
T |
|
| Q |
401 |
atctcttttgggatgaatcaaactttttcactccaaaccctgatttggtaacataaacatcactagattgcatatcaaaatatcaaaaccttgaactaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
5545957 |
atctcttttgggatgaatcaaactttttcactccaaacccagatttggtaacataagcatcactagattgcatatcaaaaaatcaaaactttgaactaat |
5546056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 8562098 - 8562161
Alignment:
| Q |
271 |
catcaagagctagctgaaacatctctcttctgttgtaaccttaattatattctccttttgtttc |
334 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
8562098 |
catcaagagttagctgaaacatttatcttctgttgtatccttaattatattctcattttgtttc |
8562161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 21933521 - 21933584
Alignment:
| Q |
271 |
catcaagagctagctgaaacatctctcttctgttgtaaccttaattatattctccttttgtttc |
334 |
Q |
| |
|
||||||||| ||| |||||||| | ||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
21933521 |
catcaagagttagttgaaacatttatcttccattgtatccttaattatattctcattttgtttc |
21933584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 39477674 - 39477734
Alignment:
| Q |
274 |
caagagctagctgaaacatctctcttctgttgtaaccttaattatattctccttttgtttc |
334 |
Q |
| |
|
|||||| |||||||||||| | ||||| ||| || |||||||||||||||| ||||||||| |
|
|
| T |
39477674 |
caagagttagctgaaacatttatcttccgttctatccttaattatattctcattttgtttc |
39477734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University