View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_high_42 (Length: 236)
Name: NF3949_high_42
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 55696984 - 55697099
Alignment:
| Q |
1 |
tatataaagttgttagaaaaacattgcagaacaaaatatctgagcacgcaataacaacctagattaagagatcctggataaattaaatatagcttgagga |
100 |
Q |
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| T |
55696984 |
tatataaagttgttagaaaaacattgcagaacaaaatatctgaggacgcaataacaacctagattaagagatcctggataaattaaatatagcttgagga |
55697083 |
T |
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| Q |
101 |
agttgataatcaaatt |
116 |
Q |
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| T |
55697084 |
agttgataatcaaatt |
55697099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 55697407 - 55697453
Alignment:
| Q |
70 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
116 |
Q |
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| T |
55697407 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
55697453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 32012017 - 32012119
Alignment:
| Q |
118 |
aagaagttgaaggctttgcatgaggtgtacgagggaggatgcatgagtcatcgttcagacaggccctagatataagttgtctttattggctcaagcatgt |
217 |
Q |
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||||||||||||||||||||||||| | || ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32012017 |
aagaagttgaaggctttgcatgaggggaacaggggaggatgcatgagtcattgtttagacaggccctagatataagttgtctttattggctcaagcatgt |
32012116 |
T |
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| Q |
218 |
cat |
220 |
Q |
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||| |
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| T |
32012117 |
cat |
32012119 |
T |
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