View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_high_43 (Length: 236)
Name: NF3949_high_43
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39550098 - 39550322
Alignment:
| Q |
1 |
attatgctcgaaagaggtggcattatagtacaaatttggtttgtttgttaagttgataatataaatagagttttagaaat----atacacaagcaatata |
96 |
Q |
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| T |
39550098 |
attatgctcgaaagatgtggcattatagtacaaatttggtttgtttgttaagttgataatataaatagagttttagaaataaatatacacaagcaatata |
39550197 |
T |
|
| Q |
97 |
aaattatctttaataaactaagtagtttggtgttattaaacagactcttgatggaatgaattttagctaaaggtgaaagtgaaaacaaatttggttgaag |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39550198 |
aaattatctttaataaactaagtagtttggtgttattaaacagactcttgatggaatgaattttagctaaaggtgaaagtgaaaacaaatttggttgaag |
39550297 |
T |
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| Q |
197 |
gtgaaaactggccaaaaacacagcc |
221 |
Q |
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||||||||||||||||||||||||| |
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| T |
39550298 |
gtgaaaactggccaaaaacacagcc |
39550322 |
T |
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