View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3949_high_5 (Length: 512)

Name: NF3949_high_5
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3949_high_5
NF3949_high_5
[»] chr8 (12 HSPs)
chr8 (55-494)||(7756298-7756737)
chr8 (55-126)||(2052958-2053029)
chr8 (58-148)||(15824634-15824725)
chr8 (55-151)||(29920262-29920359)
chr8 (57-93)||(7757797-7757833)
chr8 (55-107)||(7022397-7022449)
chr8 (10-38)||(7756754-7756782)
chr8 (55-107)||(7858642-7858694)
chr8 (55-107)||(26483646-26483698)
chr8 (139-215)||(29147316-29147392)
chr8 (55-107)||(34890168-34890220)
chr8 (270-302)||(40773597-40773629)
[»] chr3 (2 HSPs)
chr3 (55-107)||(54464848-54464900)
chr3 (61-177)||(26724949-26725066)
[»] chr7 (4 HSPs)
chr7 (55-176)||(19912761-19912883)
chr7 (55-112)||(2633329-2633386)
chr7 (55-107)||(18102646-18102698)
chr7 (55-107)||(37767011-37767063)
[»] chr4 (4 HSPs)
chr4 (59-176)||(35310732-35310850)
chr4 (55-176)||(5483264-5483386)
chr4 (55-107)||(4058829-4058881)
chr4 (55-107)||(29203620-29203672)
[»] chr1 (5 HSPs)
chr1 (66-151)||(3861699-3861785)
chr1 (55-176)||(52841438-52841560)
chr1 (55-107)||(15959633-15959685)
chr1 (55-151)||(25990815-25990912)
chr1 (55-107)||(35691509-35691560)
[»] scaffold0062 (1 HSPs)
scaffold0062 (55-107)||(44764-44816)
[»] chr6 (1 HSPs)
chr6 (55-107)||(9428861-9428913)
[»] chr2 (6 HSPs)
chr2 (55-151)||(7645219-7645316)
chr2 (55-107)||(6110191-6110243)
chr2 (84-151)||(29514040-29514108)
chr2 (84-151)||(29514496-29514564)
chr2 (55-107)||(35023014-35023066)
chr2 (55-151)||(40808712-40808808)
[»] chr5 (3 HSPs)
chr5 (55-107)||(6686501-6686553)
chr5 (55-107)||(20039218-20039270)
chr5 (55-107)||(20644130-20644182)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 55 - 494
Target Start/End: Complemental strand, 7756737 - 7756298
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcatgaaaaaggtaaaaacaattttcttt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756737 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcatgaaaaaggtaaaaacaattttcttt 7756638  T
Q  155 gtttgttggttatagagaaaatatgatgtagataaaattaaacgcaatttacatttaatttatgaaaataaggtaaaagaattctcggaaattatgnnnn 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        
T  7756637 gtttgttggttatagagaaaatatgatgtagataaaattaaacgcaatttacatttaatttatgaaaataaggtaaaagaattcttggaaattatgtttt 7756538  T
Q  255 nnnnnaaacaagataattaaatagggtaaaagttagtcttttttacttttaacaggaaaaataagnnnnnnnctttataatttgagaccgaagaagtatg 354  Q
         |||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  7756537 tttttaaacaaaataattaaataaggtaaaagttaat-ttttttacttttaacaggaaaaataagtttttttctttataatttgagaccgaagaagtatg 7756439  T
Q  355 tgcattgaacgtgctttattgactgtttctcatgcatgcgctcacccgctactctagtctcatgcattcaccccaaagttgaaattttggtcacaaattg 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756438 tgcattgaacgtgctttattgactgtttctcatgcatgcgctcacccgctactctagtctcatgcattcaccccaaagttgaaattttggtcacaaattg 7756339  T
Q  455 ataatgaaaacaacatgatgcttgttggtg-aagatccttt 494  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  7756338 ataatgaaaacaacatgatgcttgttggtgaaagatccttt 7756298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 2053029 - 2052958
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagttt 126  Q
    ||||| ||||||||||| |||||||| ||||||| ||||||||| |||||||| | ||  ||||||||||||    
T  2053029 tcacacttattaagaaaactaaaacataataattagaagtataattttttgtgttttctttagaataagttt 2052958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 15824634 - 15824725
Alignment:
Q  58 catttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcat-gaaaaaggtaaaaacaatt 148  Q
    |||||| ||||||| |||||||| || |||||||||||||  |||||||| | ||  ||||||||||||||| |||| | ||||||||||||    
T  15824634 catttagtaagaaaactaaaacataagaatttgaagtatagttttttgtgttttctttagaataagtttcatggaaagatgtaaaaacaatt 15824725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 29920262 - 29920359
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcat-gaaaaaggtaaaaacaattttc 151  Q
    ||||| ||||||||||| |||||||| || ||||||||||| || |||||||| | ||  | ||||||||||||| | || | |||||||||||||||    
T  29920262 tcacacttattaagaaaactaaaacataagaatttgaagtacaattttttgtgttatctttggaataagtttcatgggaagatgtaaaaacaattttc 29920359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 7757833 - 7757797
Alignment:
Q  57 acatttattaagaaacctaaaacacaataatttgaag 93  Q
    |||||||||||||||||||||| ||||||||||||||    
T  7757833 acatttattaagaaacctaaaatacaataatttgaag 7757797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 7022397 - 7022449
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| |||||||| || |||||| ||||||  ||||||||    
T  7022397 tcacatttattaagaaaactaaaacataaaaatttggagtatagttttttgtg 7022449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 7756782 - 7756754
Alignment:
Q  10 attatactccttccgtctcaaataataag 38  Q
    |||||||||||||||||||||||||||||    
T  7756782 attatactccttccgtctcaaataataag 7756754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 7858694 - 7858642
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| |||||||| || |||||| ||||||  ||||||||    
T  7858694 tcacatttattaagaaaactaaaacataagaatttggagtatagttttttgtg 7858642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 26483698 - 26483646
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||| ||||||||||| |||||||| || |||||||||||||  ||||||||    
T  26483698 tcacacttattaagaaaactaaaacataagaatttgaagtatagttttttgtg 26483646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 29147316 - 29147392
Alignment:
Q  139 aaaaacaattttctttgtttgttggttatagagaaaatatgatgtagataaaattaaacgcaatttacatttaattt 215  Q
    ||||||||||||| ||  |||||| |||||||||||||   ||| |||| |||||||| ||| ||| ||||||||||    
T  29147316 aaaaacaattttcattagttgttgattatagagaaaatgaaatggagatcaaattaaatgcagtttgcatttaattt 29147392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 34890168 - 34890220
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||| ||||||||||| |||||||| || |||||| ||||||| ||||||||    
T  34890168 tcacacttattaagaaaactaaaacataagaatttggagtataattttttgtg 34890220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 40773597 - 40773629
Alignment:
Q  270 attaaatagggtaaaagttagtcttttttactt 302  Q
    |||||||||||||||||||| ||||||||||||    
T  40773597 attaaatagggtaaaagttaatcttttttactt 40773629  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 54464848 - 54464900
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| |||||||| || |||||||||||||| ||||||||    
T  54464848 tcacatttattaagaaaactaaaacataagaatttgaagtataattttttgtg 54464900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 26724949 - 26725066
Alignment:
Q  61 ttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcatga-aaaaggtaaaaacaattttctttgtttg 159  Q
    ||||||||||| |||||| | || |||||||||||||| |||||||| | ||  | ||||||||||  ||| || | ||||||||||||||| ||| ||     
T  26724949 ttattaagaaaactaaaatataagaatttgaagtataattttttgtgttttctttggaataagttttctgagaagatgtaaaaacaattttcattggtta 26725048  T
Q  160 ttggttatagagaaaata 177  Q
    ||| |||| |||||||||    
T  26725049 ttgattatggagaaaata 26725066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 19912761 - 19912883
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcat-gaaaaaggtaaaaacaattttctt 153  Q
    ||||||||||||||||| |||||||| || |||||| ||||||  |||||||| | ||  | ||| |||||| || | |||| ||||||||||||||| |    
T  19912761 tcacatttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaaaaagttttatagtaaaatgtaaaaacaattttcat 19912860  T
Q  154 tgtttgttggttatagagaaaat 176  Q
    || || |||||||| || |||||    
T  19912861 tggttattggttatggaaaaaat 19912883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 2633329 - 2633386
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctc 112  Q
    ||||||||||||||||| |||||||| |||||||| | ||| ||||||| ||| ||||    
T  2633329 tcacatttattaagaaaactaaaacataataattttaggtaaaacttttggtgttctc 2633386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 18102698 - 18102646
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||| ||||||||||| |||||||| || |||||| ||||||| ||||||||    
T  18102698 tcacacttattaagaaaactaaaacataagaatttggagtataattttttgtg 18102646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 37767011 - 37767063
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| ||||||||  |||||||| ||||||  ||||||||    
T  37767011 tcacatttattaagaaaactaaaacatgataatttggagtatagttttttgtg 37767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 35310732 - 35310850
Alignment:
Q  59 atttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcat-gaaaaaggtaaaaacaattttctttgtt 157  Q
    ||||||||||||| |||||||| || |||||| || |||  |||||||| | ||  ||||||||||||||| |||| | ||||||||||||||| |||      
T  35310732 atttattaagaaaactaaaacataagaatttgtagcatagttttttgtgttttctttagaataagtttcatggaaagatgtaaaaacaattttcattggc 35310831  T
Q  158 tgttggttatagagaaaat 176  Q
    | |||||||| || |||||    
T  35310832 tattggttatggaaaaaat 35310850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 5483264 - 5483386
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcat-gaaaaaggtaaaaacaattttctt 153  Q
    ||||| || |||||||| |||||||| || |||||||||||||| |||||||| | ||  || ||||||||| || | || | ||||||||||||||| |    
T  5483264 tcacacttgttaagaaaactaaaacataaaaatttgaagtataattttttgtgttttctttaaaataagtttaataggaagatgtaaaaacaattttcat 5483363  T
Q  154 tgtttgttggttatagagaaaat 176  Q
    ||  |  ||||||| ||||||||    
T  5483364 tggctactggttatggagaaaat 5483386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 4058881 - 4058829
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| |||||||| || |||||| ||||||  ||||||||    
T  4058881 tcacatttattaagaaaactaaaacataagaatttggagtatagttttttgtg 4058829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 29203672 - 29203620
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||| ||||||||||| |||||||| || |||||| ||||||| ||||||||    
T  29203672 tcacacttattaagaaaactaaaacataagaatttggagtataattttttgtg 29203620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 3861699 - 3861785
Alignment:
Q  66 aagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttca-tgaaaaaggtaaaaacaattttc 151  Q
    |||||| |||||||| ||||||||||||||||| ||||| || | ||  |||||||||||| | ||||| | |||||||||||||||    
T  3861699 aagaaaactaaaacataataatttgaagtataattttttatgttttctttagaataagttttattgaaagatgtaaaaacaattttc 3861785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 52841438 - 52841560
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcat-gaaaaaggtaaaaacaattttctt 153  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||  || ||||  | ||  || |||||||||||| |||| | || |||||||||||| |    
T  52841438 tcacatttattaagaaaactaaaacacaatagtttgtagtatagtttcttgtcttatccttaaaataagtttcatagaaagatgttaaaacaattttcat 52841537  T
Q  154 tgtttgttggttatagagaaaat 176  Q
    || || || ||||||| ||||||    
T  52841538 tggttattagttatagggaaaat 52841560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 15959633 - 15959685
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| |||||||| || |||||| ||||||| ||||||||    
T  15959633 tcacatttattaagaaaactaaaacataagaatttggagtataattttttgtg 15959685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 25990912 - 25990815
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcat-gaaaaaggtaaaaacaattttc 151  Q
    ||||||||||||||||| |||| ||  | | |||||| |||||| |||||||| ||||  | ||||||||||||| |||| | ||||||| |||||||    
T  25990912 tcacatttattaagaaaactaacacttagtgatttgaggtataattttttgtgttctccttggaataagtttcatggaaatatgtaaaaataattttc 25990815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 35691560 - 35691509
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| |||||||| || |||||| ||||||| ||||||||    
T  35691560 tcacatttattaagaaa-ctaaaacataagaatttggagtataattttttgtg 35691509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 44764 - 44816
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||  ||||||||    
T  44764 tcacatttattaagaaaactaaaacataataatttggagtatatttttttgtg 44816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 9428913 - 9428861
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||| ||| |||||||| || |||||||||||||| ||||||||    
T  9428913 tcacatttattaataaaactaaaacataagaatttgaagtataattttttgtg 9428861  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 7645219 - 7645316
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcat-gaaaaaggtaaaaacaattttc 151  Q
    ||||| ||||||||||| |||||||| || |||||| |||||||  ||||||| | ||  |||||||| |||||| | || | |||||||||||||||    
T  7645219 tcacacttattaagaaaactaaaacataagaatttggagtataatattttgtgttttccttagaataaatttcatgggaacatgtaaaaacaattttc 7645316  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 6110191 - 6110243
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||| ||||||||||| |||||||| || |||||| |||||| |||||||||    
T  6110191 tcacacttattaagaaaactaaaacataagaatttggagtatagctttttgtg 6110243  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 29514040 - 29514108
Alignment:
Q  84 taatttgaagtataactttttgtgctctcactagaataagtttcatgaaaa-aggtaaaaacaattttc 151  Q
    |||||||| |||||| |||||||| ||||  |||||||| ||||||||||| | ||||||| |||||||    
T  29514040 taatttgaggtataattttttgtgttctccttagaataaatttcatgaaaagatgtaaaaataattttc 29514108  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 29514496 - 29514564
Alignment:
Q  84 taatttgaagtataactttttgtgctctcactagaataagtttcatgaaaa-aggtaaaaacaattttc 151  Q
    |||||||| |||||| |||||||| | ||  |||||||||||||||||||| | ||||||| |||||||    
T  29514496 taatttgaggtataattttttgtgttatccttagaataagtttcatgaaaagatgtaaaaataattttc 29514564  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 35023066 - 35023014
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||| ||||||||||| |||||||| || |||||| ||||||| ||||||||    
T  35023066 tcacacttattaagaaaactaaaacataagaatttggagtataattttttgtg 35023014  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 40808712 - 40808808
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtgctctcactagaataagtttcatgaaaaaggtaaaaacaattttc 151  Q
    ||||| ||||||||||| ||||| || || |||||| || |||  |||||||| | ||  | |||||||||||||| || | |||||||||||||||    
T  40808712 tcacacttattaagaaaactaaagcataagaatttgtagcatagttttttgtgttttctttggaataagtttcatggaagatgtaaaaacaattttc 40808808  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 6686553 - 6686501
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||||||||||||||| |||||||| || |||||| ||||||  ||||||||    
T  6686553 tcacatttattaagaaaactaaaacataagaatttggagtatagttttttgtg 6686501  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 20039270 - 20039218
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||| ||||||||||| |||||||| || |||||| ||||||| ||||||||    
T  20039270 tcacacttattaagaaaactaaaacataagaatttggagtataattttttgtg 20039218  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 20644182 - 20644130
Alignment:
Q  55 tcacatttattaagaaacctaaaacacaataatttgaagtataactttttgtg 107  Q
    ||||| ||||||||||| |||||||| || |||||| ||||||| ||||||||    
T  20644182 tcacacttattaagaaaactaaaacataagaatttggagtataattttttgtg 20644130  T

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