View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_11 (Length: 418)
Name: NF3949_low_11
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 55696590 - 55697000
Alignment:
| Q |
8 |
gataattctatgtgcagtcaaatcaaaaccagtttctttccagattgcaggtatgttcaccaagtaccaaaactagagccaatatgttcttgggtaatga |
107 |
Q |
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| T |
55696590 |
gataattctatgtgcagtcaaatcaaaaccagtttctttccagattgcaggtatgttcaccaagtaccaaaactagagccaatatgttcttgggtaatga |
55696689 |
T |
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| Q |
108 |
ctttaagtcgagcttgcatgacaggcatagatgaataagctgggaaacacagccgacaaaagcatgtatgagatgaaggaaaacgatccccagattcatg |
207 |
Q |
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| T |
55696690 |
ctttaagacgagcttgcatgacaggcatagatgaataagctgggaaacacagccgataaaagcatgtatgagatgaaggaagacgatcaccggattcatg |
55696789 |
T |
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| Q |
208 |
ggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttca |
307 |
Q |
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| T |
55696790 |
ggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttca |
55696889 |
T |
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| Q |
308 |
gctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaactgagcagcatctcttatcaaatcttgatatata |
407 |
Q |
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| T |
55696890 |
gctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaactgagcagcatctcttatcaaatcttgatatata |
55696989 |
T |
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| Q |
408 |
aagttgttaga |
418 |
Q |
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| T |
55696990 |
aagttgttaga |
55697000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 229 - 340
Target Start/End: Original strand, 9235226 - 9235337
Alignment:
| Q |
229 |
ggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatc |
328 |
Q |
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| T |
9235226 |
ggaactcaagccacggaaaccttcaactggtaaatgtttcacagatgtccaaaagaacagaagaactttcttttgctctgctgacattctcccgacgatc |
9235325 |
T |
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| Q |
329 |
tgccaagttttt |
340 |
Q |
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| T |
9235326 |
tgccaagttttt |
9235337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 9246830 - 9246920
Alignment:
| Q |
248 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttt |
338 |
Q |
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| T |
9246830 |
ccttcaactggtaaatgtttcacagatgtccagaagaacagaagaaccttcttttgctctgctggcattctcccaacgatctgccaagttt |
9246920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 9254973 - 9255080
Alignment:
| Q |
234 |
ccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgcca |
333 |
Q |
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| T |
9254973 |
ccaaaccatggaaacctttaactggtaaatgtttcacagatgtccaaaagaacagaagaaccttcctttgctctgctgacattcttccaacgatctgcca |
9255072 |
T |
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| Q |
334 |
agtttttt |
341 |
Q |
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| T |
9255073 |
agtttttt |
9255080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 9264993 - 9265047
Alignment:
| Q |
248 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttctttt |
302 |
Q |
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| T |
9264993 |
ccttcgactggtaaatgtttcactgatgtccaaaagaacagaagaaccttctttt |
9265047 |
T |
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