View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_12 (Length: 408)
Name: NF3949_low_12
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 22746490 - 22746868
Alignment:
| Q |
1 |
tgcaaaatcaaggtctgttatgttcccgtggttgaggctatatcaattgcatttgaatgtcattgtttgcaacattaaggatcaccacacaattgtgatt |
100 |
Q |
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| T |
22746490 |
tgcaaaatcaaggtctgttatgttcccgtggttgaggctatatcagttgcatttgaatgtcattgtttgcaacattaaggatcacgacacaattgtgatt |
22746589 |
T |
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| Q |
101 |
taaaaccttaactacgagtacaatgttttcgatggggttagataagcaatcctggttaaaa-aatacatatacaaaaactgtaaacaaataacacacaag |
199 |
Q |
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| T |
22746590 |
taaaatcttaactacgagtacaatgttttcgatggggttagataagcaatcctggttaaaaaaatacatatacagaaactgtaaacaaataacacacaag |
22746689 |
T |
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| Q |
200 |
atttgatcatggagtttgaccaattatgtatacgtctctgcctatagagtggctacgatgatctttttattatccaggcttatggttaaaaataacaact |
299 |
Q |
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| T |
22746690 |
atttgatcacggagtttgaccaattatgtatacgtctctgcctatagaatggctacgatgatttttttattatccaggcttatggttaaaaataacaact |
22746789 |
T |
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| Q |
300 |
tgtttttagagactactatccagtttataagattaccatgagtcataccgaacagatagagcatagtgtctgtgtgtgt |
378 |
Q |
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| T |
22746790 |
tgtttttagagactactatccagtttataagattaccatgagtcataccgaacagatagagcatagtgtctgtgtgtgt |
22746868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 37348125 - 37348190
Alignment:
| Q |
165 |
acatatacaaaaactgtaaacaaataacacacaagatttgatcatggagtttgaccaattatgtat |
230 |
Q |
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| T |
37348125 |
acatatatgaaaaccgtagacaaagaacacacgaaatttgatcatggaggttggccaattatgtat |
37348190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 532198 - 532241
Alignment:
| Q |
182 |
aaacaaataacacacaagatttgatcatggagtttgaccaattat |
226 |
Q |
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| T |
532198 |
aaacaaagaacacacaagatttgatcaaggagtttg-ccaattat |
532241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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