View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_16 (Length: 380)
Name: NF3949_low_16
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 51822430 - 51822062
Alignment:
| Q |
1 |
gaaagattagactatttcttttcttaccctccatgtctaatccgaattataaaatccgnnnnnnn--ttagttatatggtatttttcaacgtgtttttac |
98 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51822430 |
gaaagattagactatttcttttcttaccctccacgtctagtccaaattataaaatccgaaaaaaaaattagttatatggtatttttcaacgtgtttttac |
51822331 |
T |
|
| Q |
99 |
cattgtcgttgtgagttactaactcaatagcgatgagtacgtgtggcacatgatatcttgttgggccattggaacttgaagcccaatatgtagtttgggc |
198 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51822330 |
cattgtcggtgtgagttactaactcaatagcgatgagtacgtgtgacacatgatatcttgttgggccattggaacttgaagcccaatatgtagtttgggc |
51822231 |
T |
|
| Q |
199 |
tgaaagtctaattgtggtcccgacaataacatcgttttccttgtttat-cttgattttgattaaattaagtttggagggttgtaagtgtattaaagggaa |
297 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
51822230 |
tgaaagtccaattgtggtcccgacaataacatcgttttccgtgtttatccttgattttgattaaattaagtttggagggtagtgagtgtattaaagggaa |
51822131 |
T |
|
| Q |
298 |
agtctgaccctgaaacagttcccccctaacaacaattccgtatcatcttc--ctctttctattgtctgt |
364 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
51822130 |
agtctgaccctgaaacagttcccccctaacaacaattctgtatcatcttcctctctttctattgtctgt |
51822062 |
T |
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