View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3949_low_19 (Length: 370)
Name: NF3949_low_19
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_19 |
 | |
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| [»] scaffold0299 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 6682112 - 6681786
Alignment:
| Q |
18 |
aatagtcagagcttagctctcaatccttgaatatacatacattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaatgagacttgaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6682112 |
aatagtcagagcttagctctcaatcattgaatatacat----tcacaacaatacaaaattgaatctctaatttcaagtctcttaaaatgagacttgaatt |
6682017 |
T |
|
| Q |
118 |
gaatagttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattccta |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6682016 |
gaatggttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattccta |
6681917 |
T |
|
| Q |
218 |
acctatgtatgttacataatcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgaactgtttacgcttacgcttcaacgaaattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
6681916 |
acctatgtatgttacataatcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgagctgtttacgctt--gcttcaacgaaattt |
6681819 |
T |
|
| Q |
318 |
aatatgcttcatcaaagataataaaatttggca |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6681818 |
aatatgcttcatcaaagataataaaatttggca |
6681786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 54 - 218
Target Start/End: Original strand, 6771257 - 6771416
Alignment:
| Q |
54 |
atacattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaatgagacttgaattgaatagttggagctttgcctctcaaccattgaatat |
153 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
6771257 |
atacattcacaaaaatacaaaattgattttctaatttcaagtctcttaaaatgaga-----attgaataattggagcttagcctctcaaccattgaatat |
6771351 |
T |
|
| Q |
154 |
acttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaa |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6771352 |
acttttaaaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaa |
6771416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 6765026 - 6765105
Alignment:
| Q |
54 |
atacattcacaacaataaaaaattgaatctctaatttc-aagtctcttaaaatgagacttgaattgaatagttggagctt |
132 |
Q |
| |
|
||||||||| ||||||| |||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6765026 |
atacattcaaaacaatacaaaattgattttctaatatctaagtctcttaaaatgagacttgaattgaatagttggagctt |
6765105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 6682130 - 6682044
Alignment:
| Q |
101 |
aaaatgagacttgaattgaatagttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattt |
188 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| | ||||||| |||||||||||| || ||||||| |||||||||||||||| |||| |
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|
| T |
6682130 |
aaaaagagacttgaattgaatagtcagagcttag-ctctcaatcattgaatatacattcacaacaatacaaaattgaatctctaattt |
6682044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 6670860 - 6670820
Alignment:
| Q |
303 |
gcttcaacgaaatttaatatgcttcatcaaagataataaaa |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
6670860 |
gcttcaacgaaatttaatatgcttcatcaaagctgataaaa |
6670820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 6671037 - 6670987
Alignment:
| Q |
145 |
attgaatatacttttacaacaacacaaaattgaatctcttattttaagaga |
195 |
Q |
| |
|
||||||||||| || ||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
6671037 |
attgaatatacattcacaacaatacaaaattgattctcttgttttaagaga |
6670987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 54 - 321
Target Start/End: Complemental strand, 17714 - 17452
Alignment:
| Q |
54 |
atacattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaatgagacttgaattgaatagttggagctttgcctctcaaccattgaatat |
153 |
Q |
| |
|
||||||||| ||||||| |||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||| |
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|
| T |
17714 |
atacattcataacaatacaaaattgattttctaatttcaagtctcttaaaatgaga-----atttaatagttggagctttgactctctaccattgaataa |
17620 |
T |
|
| Q |
154 |
acttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacataatcaaatttatatacaca |
253 |
Q |
| |
|
| || |||||||||||||||||| ||||| |||||||||| || |||||| |||||||||||||||||| |||||||||||| |||||||||||||| | |
|
|
| T |
17619 |
atattcacaacaacacaaaattgagtctctcattttaagagtatgaataatgagcctattcctaacctatatatgttacataaacaaatttatatacaga |
17520 |
T |
|
| Q |
254 |
aaaggaaagattaaaatcacaacacttatgtcgaactgtttacgcttacgcttcaacgaaatttaata |
321 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17519 |
aaaggaaggatgaaaattacaacacttatgtcgaactgtttacgcttaggcttcaacgaaatttaata |
17452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 136 - 321
Target Start/End: Complemental strand, 17413 - 17228
Alignment:
| Q |
136 |
ctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacata |
235 |
Q |
| |
|
||||| ||||||||||| | || |||||||||||||||||| ||||| |||||||||| || |||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
17413 |
ctctctaccattgaataaatattcacaacaacacaaaattgagtctctcattttaagagtatgaataatgagcctattcctaacctatatatgttacata |
17314 |
T |
|
| Q |
236 |
atcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgaactgtttacgcttacgcttcaacgaaatttaata |
321 |
Q |
| |
|
| |||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17313 |
aacaaatttatatacagaaaaggaaggatgaaaattacaacacttatgtcgaactgtttacgcttatgcttcaacgaaatttaata |
17228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 54 - 347
Target Start/End: Original strand, 36845626 - 36845932
Alignment:
| Q |
54 |
atacattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaa-tgagacttgaattgaatagttggagctttgcctctcaaccattgaata |
152 |
Q |
| |
|
||||||| ||||||||| ||| |||| | |||||||||||| |||| |||| |||||||| ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
36845626 |
atacatttacaacaatacaaacttgattttctaatttcaagcctctcaaaaatgagacttaaattgaatagttggagcttaggctctcaaccattgaata |
36845725 |
T |
|
| Q |
153 |
tacttttacaacaacacaaaattgaatctcttattttaagag-aatcaataataagcctatt-------cctaacctatgtatgt---tacataatcaaa |
241 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||| | || ||||||||| |
|
|
| T |
36845726 |
tatattcacaacaacacaaaattgaatctcttattttaagagaaatgaataataaggctattcctaacccctaacctatgtatatacata-ataatcaaa |
36845824 |
T |
|
| Q |
242 |
tttatatacacaaaaggaaagattaaaatcacaacac---ttatgtcgaactgtttacgcttacgcttcaacgaaatttaatatgcttcatcaaagataa |
338 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||| || |||||||||| |||| ||||||| ||||||||| |||||||||||||| ||| |
|
|
| T |
36845825 |
tttatatacacaaaaggaaagatgaaaatcacaacactaattacgttaaactgtttacactta-gcttcaatgaaatttaaaatgcttcatcaaagctaa |
36845923 |
T |
|
| Q |
339 |
taaaatttg |
347 |
Q |
| |
|
||||||||| |
|
|
| T |
36845924 |
taaaatttg |
36845932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 109 - 350
Target Start/End: Original strand, 6160127 - 6160356
Alignment:
| Q |
109 |
acttgaattgaatagttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagc |
208 |
Q |
| |
|
|||||||||| ||||| |||||| || ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6160127 |
acttgaattgtgtagtttgagcttagc-tctcaaccattgaatatacattcacaacaacacaaaattgaatctcttattttaagagaatgaataataagg |
6160225 |
T |
|
| Q |
209 |
ctattcctaacctatgtatgttacataatcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgaactgtttacgcttacgcttca |
308 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||| || |||| |||| | |
|
|
| T |
6160226 |
ctattcctaacctatgtat-atacataatcaaatttacatacacaaaaggaaagatgaaaagcacaacactta--------tgttgacactta-gcttta |
6160315 |
T |
|
| Q |
309 |
acgaaatttaatatgcttcatcaaagataataaaatttggca |
350 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6160316 |
acgaaatttaata-gcttcatcaaagttaataaaatttggca |
6160356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 36845586 - 36845651
Alignment:
| Q |
111 |
ttgaattgaatagttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattga |
177 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| ||||||| |||||||||| ||||| |||| |
|
|
| T |
36845586 |
ttgaattgaatagttggagcttagc-tctcaaccatttaatatacatttacaacaatacaaacttga |
36845651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 294
Target Start/End: Complemental strand, 46524755 - 46524508
Alignment:
| Q |
57 |
cattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaa---tgagacttgaattgaatagttggagctttgcctctcaaccattgaa--t |
151 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||| || |||||||||||| | ||||||||||||||| | |
|
|
| T |
46524755 |
cattcacaacaatacaaaattgaatctctaatttcaagtctcttaaaaatgggagacataaatagagtagttggagcttaggctctcaaccattgaatgt |
46524656 |
T |
|
| Q |
152 |
atacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctat-----tcctaacctatgtatgttacataatcaaatttat |
246 |
Q |
| |
|
||| || ||| ||| |||||||||| |||||| |||||||||| | ||| ||||| |||| |||||| |||||||| |||||||||||| |||| |
|
|
| T |
46524655 |
atatattcacagcaatacaaaattgattctcttgttttaagagattaaat-ataaggctattgcaatcctaatctatgtat-atacataatcaaaattat |
46524558 |
T |
|
| Q |
247 |
ata--cacaaaaggaaagattaaaatcacaacacttatgtcgaactgttt |
294 |
Q |
| |
|
||| || ||||||||| | |||||| ||||||||| || ||||||||| |
|
|
| T |
46524557 |
atacccataaaaggaaacttgaaaatctcaacacttacgttgaactgttt |
46524508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 46524808 - 46524722
Alignment:
| Q |
101 |
aaaatgagacttgaattgaatagttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattt |
188 |
Q |
| |
|
||||||| |||| ||||||| |||| |||||| || |||| |||||||||| | | || ||||||| |||||||||||||||| |||| |
|
|
| T |
46524808 |
aaaatgaaacttcaattgaagagttagagcttagc-tctccaccattgaatttgcattcacaacaatacaaaattgaatctctaattt |
46524722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 49884330 - 49884268
Alignment:
| Q |
230 |
tacataatcaaatttatatacacaaaa--ggaaagattaaaatcacaacacttatgtcgaact |
290 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||| |||||| |||||||||||| ||||| |
|
|
| T |
49884330 |
tacatgatcaaaattatatacacaaaaaaggaaagatgaaaatctcaacacttatgttgaact |
49884268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Complemental strand, 49884244 - 49884214
Alignment:
| Q |
303 |
gcttcaacgaaatttaatatgcttcatcaaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49884244 |
gcttcaacgaaatttaatatgcttcatcaaa |
49884214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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