View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_20 (Length: 321)
Name: NF3949_low_20
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 107 - 304
Target Start/End: Original strand, 26746262 - 26746454
Alignment:
| Q |
107 |
atatgaagattaaattcctctatatgttcgaaacaatcatataaacgtcaatagaaaccaataataagcatggtagttgaagaagaaaaatgaggaccag |
206 |
Q |
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| T |
26746262 |
atatgaagattaaattcctttatatgttcgaaacaatcatataaacggcaatagaaaccaataataagcatagtagttgaagaagaaaaatgaggaccag |
26746361 |
T |
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| Q |
207 |
cctataacacaaatgaagtnnnnnnnnnnnnnnggaggaaaagagtataacataaaattgagtgttgcatagaagtaatcaaaaggaatgagagaagt |
304 |
Q |
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| T |
26746362 |
cctataacataaatgaagt-----aaaaaaaatggaagaaaagagtataacataaaattgagtgttgcatagaagtaatcaaaaggaatgagagaagt |
26746454 |
T |
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Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 26743768 - 26743858
Alignment:
| Q |
1 |
attctttatagttaaatagaagaagcaaagaataaacgtaacaggaaatattcttgtctcttcggtcttacttgctttacttctaaacata |
91 |
Q |
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| T |
26743768 |
attctttatagttaaatagaagaagcaaagaataaacgtaacaggaaatattcttgtctcttcggtcttacttgctttacttctaaacata |
26743858 |
T |
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