View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3949_low_21 (Length: 318)

Name: NF3949_low_21
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3949_low_21
NF3949_low_21
[»] chr4 (1 HSPs)
chr4 (18-308)||(55340172-55340461)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 55340172 - 55340461
Alignment:
Q  18 atgtcatgataacaaagcaacaaacgcaggaaatgcaagcagcttgctcatagcactcagcgtttttgagttcagtttcaattaatttggtctgtcaaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55340172 atgtcatgataacaaagcaacaaacgcaggaaatgcaagcagcttgctcatagcactcggcgtttttgagttcagtttcaattaatttggtctgtcaaat 55340271  T
Q  118 agaggtaaaaatttagtgtcaatttatgtttgttcttagtgcatcgataagtaggcaacttttcctttttctgcttcacaagttaagattccacaaagta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55340272 agaggtaaaaatttagtgtcaatttatgtttgttcttagtgcatagataagtaggcaacttttcctttttctgcttcacaagttaagattccacaaagta 55340371  T
Q  218 cctagaaagagtggttaggggtgttttaacttgggagaatttattcttgttgcttttcaatgttccacatccactcttgaccattcctttg 308  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55340372 cctagaaagagtggttaggggtg-tttatcttgggagaatttattcttgttgcttttcaatgttccacatccactcttgaccattcctttg 55340461  T

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