View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_23 (Length: 310)
Name: NF3949_low_23
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 38750734 - 38750452
Alignment:
| Q |
11 |
cacagataaaatagtgattaacaacaatcatannnnnnn-ctcaaccatttccttcaattccataattgggaaattttctttgctacttattcttcaaag |
109 |
Q |
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| T |
38750734 |
cacagataaaatagtgattaacaacaatcatattttttttctcaaccatttccttcaattccataattgggaaattttctttgctacttattcttcaaag |
38750635 |
T |
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| Q |
110 |
aactttcaagtaactactggaagcaacactaagagttgtatacttattgtaactcaataatttgattataaaacataaataacagtattagtgtctccca |
209 |
Q |
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| T |
38750634 |
aactttcaagtaactactggaagcaacactaagagttgtatacttattgtaactcaataatttgattataaaacataaataacagtattagtgtctccca |
38750535 |
T |
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| Q |
210 |
aataatgcttcacaatatgattatttaaattattgatgcatataactttgaacttgttatgtttctctgatcagagcagctac |
292 |
Q |
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| T |
38750534 |
aataatgcttcacaaattgattatttaaattattgatgcatagaactttgaacttgttatgtttctctgatcagagcagctac |
38750452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 82 - 284
Target Start/End: Original strand, 3021739 - 3021953
Alignment:
| Q |
82 |
aattttctttgctacttattcttcaaagaactttcaagtaactactggaa-------gcaacactaagagttgtatacttattgtaactcaataatttga |
174 |
Q |
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| T |
3021739 |
aattttcttggctacttaatcttcaaagaactttcaagtaactactggaaaaatgaagcaatactaaggatggtatacttgttgtatcccaataatttgt |
3021838 |
T |
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| Q |
175 |
ttataaaacataaataacagtat---tagtgtctcccaa-ataatgcttcacaatatgattatttaaattattgatgcatataactttgaacttg-ttat |
269 |
Q |
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| T |
3021839 |
ttataaaacataaataacagtattaatagtgtctcacaatataatgtttcacaaattcattatttaaattattgatacatagaaatttgaacttgtttat |
3021938 |
T |
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| Q |
270 |
gtttctctgatcaga |
284 |
Q |
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||||||| |||||| |
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| T |
3021939 |
atttctcttatcaga |
3021953 |
T |
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