View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3949_low_24 (Length: 305)

Name: NF3949_low_24
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3949_low_24
NF3949_low_24
[»] chr7 (1 HSPs)
chr7 (1-296)||(42221776-42222071)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 42222071 - 42221776
Alignment:
Q  1 attttgtagggtttaccatcattcatagagtcattgattaatcaaacaatcacaaacattattcgcatcaaaggattgggagtgaagaaagtaattgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42222071 attttgtagggtttaccatcattcatagagtcattgattaatcaaacaatcacaaacattattcgcatcaaaggattgggagtgaagaaagtaattgtga 42221972  T
Q  101 ataatctacaaccgattggatgcctaccttcaatgacagcttcaacctcattcaaacaatgcaacgaaacatctaacaacctcctcgcagtttaccataa 200  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42221971 ataatctacaaccgattggatgtctaccttcaatgacaacttcaacctcattcaaacaatgcaacgaaacatctaacaacctcctcgcattttaccataa 42221872  T
Q  201 cacactcttaacccaagccgtgaccaaattgaaccaacaaacaaaacatcattctaaacctttcttaattcttaatctttacgatagtttcatgtc 296  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42221871 catactcttaacccaagccgtgaccaaattgaaccaacaaacaaaacatcattctaaaccttttttaattcttaatctttacgatagtttcatgtc 42221776  T

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