View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_26 (Length: 292)
Name: NF3949_low_26
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 4750893 - 4751080
Alignment:
| Q |
17 |
attacctacctgccaattgcaaggcctacagataattgtcttgcaagaattataaaagtaacataaatcatgggattgttctgtctctattcttgtcaat |
116 |
Q |
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| T |
4750893 |
attacctacctgccaattgcaaggcctacagataattgtcttgcaagaattataaaagtaacataaatcatgggattgttctctctctattcttgtcaat |
4750992 |
T |
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| Q |
117 |
gctcttggagttcttcgcctaagatcgtagtttttgctttgttttgtcctttcttcttgattnnnnnnnntaaggccaagtcataggg |
204 |
Q |
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| T |
4750993 |
gctcttggagttcttcgcctaagatcgtagtttttactttattttgtcctttcttcttgattaaaaaaaataaggccaagtcataggg |
4751080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 4741628 - 4741816
Alignment:
| Q |
17 |
attacctacctgccaattgcaaggcctacagataatt-gtcttgcaagaattataaaagtaacataaatcatgggattgttctgtctctattcttgtcaa |
115 |
Q |
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| T |
4741628 |
attacctacctgccaattgcaaggcctacagataatttgtcttgcaagaattataaaagtaacataaatcatgggattgttctgtctctattcttgtcaa |
4741727 |
T |
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| Q |
116 |
tgctcttggagttcttcgcctaagatcgtagtttttgctttgttttgtcctttcttcttgattnnnnnnnntaaggccaagtcataggg |
204 |
Q |
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| T |
4741728 |
tgctcttggagttcttcgcctaaaatcgtagtttttgctttattttgtcctttcttcttgattaaaaaaaataaggccaagtcataggg |
4741816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 4759262 - 4759337
Alignment:
| Q |
18 |
ttacctacctgccaattgcaaggcctacagataattgtcttgcaagaattataaaagtaacataaatcatgggatt |
93 |
Q |
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| T |
4759262 |
ttacctacctgccagtgccaaggcctaaagataattgccttgcaagaattataaaagtaacataaatcatgggatt |
4759337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 4741817 - 4741855
Alignment:
| Q |
239 |
ttttggaacacaattttttaacacaaaagttgacactct |
277 |
Q |
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| T |
4741817 |
ttttggaacacaattttttaacacaaaagttgacactct |
4741855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 4751081 - 4751119
Alignment:
| Q |
239 |
ttttggaacacaattttttaacacaaaagttgacactct |
277 |
Q |
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| T |
4751081 |
ttttggaacacaattttttaacacaaaagttgacactct |
4751119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 13583616 - 13583687
Alignment:
| Q |
106 |
ttcttgtcaatgctcttggagttcttcgcctaagatcgtagtttttgctttgttttgtcctttcttcttgat |
177 |
Q |
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| T |
13583616 |
ttcttttcgatgttcttggagttgatcgcctaatattgtagtttttactttgttttgtcctttcttcttgat |
13583687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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