View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_28 (Length: 278)
Name: NF3949_low_28
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 34548073 - 34548319
Alignment:
| Q |
16 |
attttcatttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatcttttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgtt |
115 |
Q |
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| T |
34548073 |
attttcatttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatcttttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgtt |
34548172 |
T |
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| Q |
116 |
gtaactggacatgctttttgaggttgcccttttggcatgttgaatttattagcaactatatccactgaacttatagttgcaagtgcaccacccaaactgt |
215 |
Q |
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| T |
34548173 |
gtaactggacatgctttttgaggttgctcttttggcatgttgaatttattagcaactatatccactgaacttatagttgcaagtgcaccacccaaactgt |
34548272 |
T |
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| Q |
216 |
gtccagttacagttatgctaatttcttcattcttgtatagctccaca |
262 |
Q |
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| T |
34548273 |
gtccagttacagttatgctaatttcttcattcttgtatagctccaca |
34548319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 34556573 - 34556812
Alignment:
| Q |
23 |
tttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatcttttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgttgtaactg |
122 |
Q |
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| T |
34556573 |
tttcgaataaacaatgctctcaaatcattgttgtcggagaaaatcttttcaaagttagaatttccaacacgaggtgaaccaaatgcaaataatgtgactg |
34556672 |
T |
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| Q |
123 |
gacatgctttttgaggttgcccttttggcatgttgaatttattagcaactatatccactgaacttatagttgcaagtgcaccacccaaactgtgtccagt |
222 |
Q |
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| T |
34556673 |
gacatgttttttgaggttgcccttttggtatgttgaatttattagcaactatatccatagagcttatagttgcaagtgcaccacccaagctgtgtcccgt |
34556772 |
T |
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| Q |
223 |
tacagttatgctaatttcttcattcttgtatagctccaca |
262 |
Q |
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| T |
34556773 |
tacagttatgctaatttcttcattcttatatagctccaca |
34556812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 4674847 - 4674924
Alignment:
| Q |
176 |
tccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtat |
253 |
Q |
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| T |
4674847 |
tccactgcatttagagttgcaattgcagcacctaaactgtgacctgttatagttatgcttatttcttcattcttgtat |
4674924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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