View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3949_low_3 (Length: 558)
Name: NF3949_low_3
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 14 - 537
Target Start/End: Complemental strand, 33117642 - 33117119
Alignment:
| Q |
14 |
gaaaccggttgggctctccttagcaaaggaccatctgttgtgttgagtggtcatggtacaacaattctcaaaactgtggctgaatttgagaaatggaaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117642 |
gaaaccggttgggctctccttagcaaaggaccatctgttgtgttgagtggtcatggtacaacaattctcaaaactgtggctgaatttgagaaatggaaag |
33117543 |
T |
|
| Q |
114 |
atgttgtgattaagaaaggatttgaatttgcattcactgagtatcacaccaatgttgctcgtgtcactcatcgttgctcgcaccttgaaattcctattgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117542 |
atgttgtgattaagaaaggatttgaatttgcattcaccgagtatcacaccaatgttgctcgtgtcactcatcgttgctcgcaccttgaaattcctattgt |
33117443 |
T |
|
| Q |
214 |
tgctggaaagttacctgagactataaaatgtcctgattgtcctagtaccatggagattttcatcagctataagtgttgccacaataagaccaatgcaaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117442 |
tgctggaaagttacctgagactataaaatgtcctgattgtcctagtaccatggagattttcatcagctataagtgttgccacaataagaccaatgcaaat |
33117343 |
T |
|
| Q |
314 |
ggaaaacattaaggtttgatgtggttttatgttactaggtcttgtggtccttggttcgagatttgacgtcttnnnnnnnntattattgggttttgttgtt |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
33117342 |
ggaaaacattagggtttgatgtggttttatgttactaggtcttgtggtccttggttcgagatttgacgtcttaaaaaaaatagtattgggttttgttgtt |
33117243 |
T |
|
| Q |
414 |
tgatctcgtgaataagagtgtgggactttcagaatcttttggttatgttccacgccaatttgttttaaaataaagatctctttgtaacccaaaaaataat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117242 |
tgatctcgtgaataagagtgtgggactttcagaaccttttggttacgttccacgccaatttgttgtaaaataaagatctctttgtaacccaaaaaataat |
33117143 |
T |
|
| Q |
514 |
ggtgttgtgttgttttctatgtgc |
537 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33117142 |
ggtgttgtgttgttttctatgtgc |
33117119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University