View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_30 (Length: 253)
Name: NF3949_low_30
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 51310930 - 51311177
Alignment:
| Q |
1 |
caggattgataggaaaaacactggctgctttgttgccaaaggtaaggctgtcaaaatttggttatgtgaattgaggaagcaatgatttcattgtattatg |
100 |
Q |
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| T |
51310930 |
caggattgataggaaaaacactggctgctttgttgccaaaggtaaggctgtcaaaatttggttatgtgaattgaggaagcaatgatttcattgtattatg |
51311029 |
T |
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| Q |
101 |
aatggagacaccaataaaattttgctactatatatgaatgattaattgattatgataaacttgaacttaaatgatatgaccaagatggctcactttgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51311030 |
aatggagacaccaataaaattttgctactatatatgaatgattaattgattatgataaacttgaacttaaatgatatgaccaagatggctcactttgaca |
51311129 |
T |
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| Q |
201 |
tgctgtgctatgctaattgtgtttattgacttaaattcctttgcttct |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51311130 |
tgctgtgctatgctaattgtgtttattgacttaaattcctttgcttct |
51311177 |
T |
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