View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_33 (Length: 251)
Name: NF3949_low_33
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 36728747 - 36728528
Alignment:
| Q |
19 |
aaggtgagagtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaataaagaccatggcacaatgatagccatggttacttgcgctc |
118 |
Q |
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| T |
36728747 |
aaggtgagagtggctgtgcggttaccagtacgtgcagcggatggcggcagagaggccaataaagaccatggaacaatgatagccatggttacttgcgctc |
36728648 |
T |
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| Q |
119 |
caagaaaagaaataaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatcttaaacgtatatatgagaaaaactaaagatataa |
218 |
Q |
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| T |
36728647 |
caagaaaagaaataaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatctttaacgtatatatgagaaaaactaaagatataa |
36728548 |
T |
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| Q |
219 |
tcgtatctcatcacacaggt |
238 |
Q |
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| T |
36728547 |
tcgtatctcatcacacaggt |
36728528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 36715093 - 36714914
Alignment:
| Q |
54 |
agcggatggcggcagagaggccaataaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaat-aaaccatggtttcagaattca |
152 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |
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| T |
36715093 |
agcggatggcggcagagaggccaaaaaagaccatggcacaatgttagccatggttacttgcgctccaagaaaatcaataaaaccatgatttcagaattca |
36714994 |
T |
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| Q |
153 |
aaggattatacatctgccaccattaatgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcac |
232 |
Q |
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|||||| ||| || ||| ||| || |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
36714993 |
aaggataatatatatgctaccgtttatgagtcttaaacgtatatatgaggaaaactaaagatataatcttatctcatcac |
36714914 |
T |
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