View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3949_low_35 (Length: 247)

Name: NF3949_low_35
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3949_low_35
NF3949_low_35
[»] chr3 (7 HSPs)
chr3 (57-218)||(16968005-16968165)
chr3 (58-114)||(42994918-42994974)
chr3 (36-116)||(35485240-35485320)
chr3 (58-114)||(53827684-53827740)
chr3 (58-113)||(42381615-42381670)
chr3 (196-229)||(16968117-16968150)
chr3 (69-113)||(19866733-19866777)
[»] chr4 (4 HSPs)
chr4 (69-114)||(24972389-24972434)
chr4 (69-113)||(40450931-40450975)
chr4 (69-114)||(46817466-46817511)
chr4 (37-113)||(28798147-28798223)
[»] chr1 (2 HSPs)
chr1 (58-113)||(50069257-50069312)
chr1 (58-115)||(39650194-39650251)
[»] chr6 (1 HSPs)
chr6 (37-114)||(14154579-14154656)
[»] chr5 (4 HSPs)
chr5 (58-118)||(1975325-1975385)
chr5 (58-114)||(40008711-40008767)
chr5 (36-115)||(3458012-3458091)
chr5 (57-116)||(6158964-6159023)
[»] chr8 (2 HSPs)
chr8 (58-113)||(33800521-33800576)
chr8 (69-117)||(4640829-4640877)
[»] chr2 (1 HSPs)
chr2 (58-114)||(18394993-18395049)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 16968005 - 16968165
Alignment:
Q  57 tattttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattcaaaaacaaaatatttgcactcgttcactgtgggagatatgttt 156  Q
    ||||||||||| ||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  16968005 tattttagacatttattttaggaatgagtgatacggtttaagtaatgagcagaattcaaaaacaaa-tatttgcgctcgttcactgtgggagatatgttt 16968103  T
Q  157 cactcatccaccgtatattaagcattagctaacaatccgtatattaagctttagctaacaat 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16968104 cactcatccaccctatattaagcattagctaacaatccgtatattaagctttagctaacaat 16968165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 42994918 - 42994974
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattca 114  Q
    |||||||||| ||||||| |||||||||||| |  ||||||||||||||||||||||    
T  42994918 attttagacatttactttgggaatgagcgatactatttaggtaatgagcagaattca 42994974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 35485320 - 35485240
Alignment:
Q  36 gcatgtttacttgtgcaggaatattttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattcaaa 116  Q
    ||||||| || ||||||||   |||||| ||| |||||||| ||||||||||| | |||| | ||||||||||||||||||    
T  35485320 gcatgttaacatgtgcaggggcattttaaacatttactttaagaatgagcgatactgtttggataatgagcagaattcaaa 35485240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 53827684 - 53827740
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattca 114  Q
    ||||| |||| ||||||| |||||||||||| |  ||||||||||||||||||||||    
T  53827684 attttggacatttactttgggaatgagcgatactatttaggtaatgagcagaattca 53827740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 42381670 - 42381615
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattc 113  Q
    ||||| |||| ||||||| | |||||||||||  ||||||||||||||||||||||    
T  42381670 attttggacatttactttggaaatgagcgatgttgtttaggtaatgagcagaattc 42381615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 16968117 - 16968150
Alignment:
Q  196 tatattaagctttagctaacaatccgtatattaa 229  Q
    |||||||||| |||||||||||||||||||||||    
T  16968117 tatattaagcattagctaacaatccgtatattaa 16968150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 19866777 - 19866733
Alignment:
Q  69 ttactttaggaatgagcgatgcggtttaggtaatgagcagaattc 113  Q
    ||||||| |||||||||||| | |||| |||||||||||||||||    
T  19866777 ttactttgggaatgagcgatactgtttgggtaatgagcagaattc 19866733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 24972434 - 24972389
Alignment:
Q  69 ttactttaggaatgagcgatgcggtttaggtaatgagcagaattca 114  Q
    |||||||||||||||||||| | |||||||||||||||||||||||    
T  24972434 ttactttaggaatgagcgatactgtttaggtaatgagcagaattca 24972389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 40450975 - 40450931
Alignment:
Q  69 ttactttaggaatgagcgatgcggtttaggtaatgagcagaattc 113  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||    
T  40450975 ttactttgggaatgagcgatactgtttaggtaatgagcagaattc 40450931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 46817466 - 46817511
Alignment:
Q  69 ttactttaggaatgagcgatgcggtttaggtaatgagcagaattca 114  Q
    |||||||| ||||||||||| | ||| |||||||||||||||||||    
T  46817466 ttactttaagaatgagcgatactgttcaggtaatgagcagaattca 46817511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 28798147 - 28798223
Alignment:
Q  37 catgtttacttgtgcaggaatattttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattc 113  Q
    |||||| || ||||||||   ||||| |||| |||||||  ||||||||||| | |||| |||||||||||||||||    
T  28798147 catgttaacatgtgcaggggcattttggacatttactttgagaatgagcgatactgtttgggtaatgagcagaattc 28798223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 50069257 - 50069312
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattc 113  Q
    ||||| |||| ||||||| |||||||||||||| |||| |||||||||||||||||    
T  50069257 attttggacatttactttgggaatgagcgatgctgtttgggtaatgagcagaattc 50069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 39650251 - 39650194
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattcaa 115  Q
    ||||| |||| |||||||||||||||||||  |  |||||||||||||||||||||||    
T  39650251 attttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattcaa 39650194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 14154579 - 14154656
Alignment:
Q  37 catgtttacttgtgcaggaatattttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattca 114  Q
    |||||| || || ||||| | ||||| |||| ||| |||||||||||||||| |||||| |||||||| |||||||||    
T  14154579 catgttaacatgcgcagggacattttggacatttattttaggaatgagcgattcggtttgggtaatgatcagaattca 14154656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 1975325 - 1975385
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattcaaaaa 118  Q
    ||||| |||| ||||||| | ||||||| |||| |||||| ||||||||||||||||||||    
T  1975325 attttggacatttactttggaaatgagcaatgctgtttagataatgagcagaattcaaaaa 1975385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 40008767 - 40008711
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattca 114  Q
    |||||||||| |||||||  |||||||||||   |||||||||||||||||||||||    
T  40008767 attttagacatttactttgagaatgagcgataatgtttaggtaatgagcagaattca 40008711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 3458091 - 3458012
Alignment:
Q  36 gcatgtttacttgtgcaggaatattttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattcaa 115  Q
    ||||||| || |||||| |  |||||| |||| ||||||| | ||||||| || |||||| |||||||||||||||||||    
T  3458091 gcatgttaacatgtgcatgggtattttggacatttactttggaaatgagcaatacggtttcggtaatgagcagaattcaa 3458012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 6158964 - 6159023
Alignment:
Q  57 tattttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattcaaa 116  Q
    ||||||||||| ||||||| |||||||||||  |  |||| |||||||||||||||||||    
T  6158964 tattttagacatttactttgggaatgagcgaatccatttaagtaatgagcagaattcaaa 6159023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 33800521 - 33800576
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattc 113  Q
    |||||||||| |||||||||||||||||||| | |||||  |||||||| ||||||    
T  33800521 attttagacatttactttaggaatgagcgatactgtttaaataatgagcggaattc 33800576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 4640829 - 4640877
Alignment:
Q  69 ttactttaggaatgagcgatgcggtttaggtaatgagcagaattcaaaa 117  Q
    ||||||| | |||||||||| | |||| |||||||||||||||||||||    
T  4640829 ttactttggaaatgagcgatacagtttgggtaatgagcagaattcaaaa 4640877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 18394993 - 18395049
Alignment:
Q  58 attttagacagttactttaggaatgagcgatgcggtttaggtaatgagcagaattca 114  Q
    ||||| |||| ||||||| ||||||||||||   |||| ||||||||||||||||||    
T  18394993 attttggacaattactttgggaatgagcgatattgtttgggtaatgagcagaattca 18395049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University