View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_40 (Length: 239)
Name: NF3949_low_40
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 51892872 - 51892652
Alignment:
| Q |
1 |
attcaaaaaatacgactgaaaggagcggttataagtcggtgtcacaataatcaattgcttcctcgccacaatatcaattttctcagattcaaccaattcc |
100 |
Q |
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| T |
51892872 |
attcaaaaaatacgactgaaaggagcggttataagtcggtgtcacaataatcaattgcttcctcgccacaatatcaattttctcagattcacccaattcc |
51892773 |
T |
|
| Q |
101 |
ctctctttcagcttttcattatccttctcagcgttcatatttgagctcaaacttacttgttcaatcataaaacccttacccttcttatcctcatcctcgt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51892772 |
ctctctttcagattttcattatccttctcagcgttcatatttgagctcaaacttacttgttcaatcataaaacccttacccttcttatcctcatcctcgt |
51892673 |
T |
|
| Q |
201 |
cgtcggcgtcaccaacaccga |
221 |
Q |
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|||||||||||||| |||||| |
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| T |
51892672 |
cgtcggcgtcaccaccaccga |
51892652 |
T |
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