View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3949_low_43 (Length: 236)
Name: NF3949_low_43
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_43 |
 | |
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| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2790590 - 2790810
Alignment:
| Q |
1 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2790590 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
2790689 |
T |
|
| Q |
101 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2790690 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
2790789 |
T |
|
| Q |
201 |
atcttttctagttcatgttca |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2790790 |
atcttttctagttcatgttca |
2790810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2797631 - 2797851
Alignment:
| Q |
1 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2797631 |
atgttacacaaaatggatgacaagtcattgattatacaagtgaggcaatacctgcaacataaaaagtatttgatattctttgatgatgtatggcaagaag |
2797730 |
T |
|
| Q |
101 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
200 |
Q |
| |
|
| ||||| |||||| ||||||||||||| || |||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2797731 |
acttttctgaccaggttgaatttgccatgcctaataacaacaaagcaaataggatcatcatcaccacgagaatgatgcaagttgcagattttttcaagaa |
2797830 |
T |
|
| Q |
201 |
atcttttctagttcatgttca |
221 |
Q |
| |
|
||| |||| |||||||||||| |
|
|
| T |
2797831 |
atcctttcaagttcatgttca |
2797851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 2807539 - 2807757
Alignment:
| Q |
3 |
gttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaagat |
102 |
Q |
| |
|
||||| |||| |||||||||| ||||| ||| || ||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2807539 |
gttacgcaaattggatgacaaatcactgattgtagaagtgaggcaatacctgcaacataagaggtatttgatattctttgatgatgtatggcaagaagat |
2807638 |
T |
|
| Q |
103 |
ttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaaat |
202 |
Q |
| |
|
||||| |||||| |||||||||| || || || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807639 |
ttttctgaccaggttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaat |
2807738 |
T |
|
| Q |
203 |
cttttctagttcatgttca |
221 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
2807739 |
cctttctagttcatgttca |
2807757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 2759486 - 2759704
Alignment:
| Q |
3 |
gttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaagat |
102 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| | | || ||| ||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2759486 |
gttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctagaacataagaggtatttgatattctttgatgatgtatggcaagaagat |
2759585 |
T |
|
| Q |
103 |
ttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaaat |
202 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2759586 |
ttttccgaccaggttgaatttgccatgcctaataacaacaaaggtagtaggatcataatcaccactagaattatgcaagttgcagattttttcaagaaat |
2759685 |
T |
|
| Q |
203 |
cttttctagttcatgttca |
221 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
2759686 |
catttctagttcatgttca |
2759704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2855678 - 2855469
Alignment:
| Q |
1 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
100 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||||| ||||||| | ||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
2855678 |
atgttgcacaaaatggatgaccagtcactgattatacaagtaaggcaatacctgcaacataagaggtatttggtattctttgatgatgtttggcaagaag |
2855579 |
T |
|
| Q |
101 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2855578 |
atttttccgaccaggttgaatttgccatgcctaataacaataaaggtagtaggatcataatcactactagaatgatgcatgttgcagaatttttcaagaa |
2855479 |
T |
|
| Q |
201 |
atcttttcta |
210 |
Q |
| |
|
||| |||||| |
|
|
| T |
2855478 |
atcctttcta |
2855469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 2818830 - 2819047
Alignment:
| Q |
4 |
ttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaagatt |
103 |
Q |
| |
|
|||| |||||||||||||| || ||| ||| || | || ||| ||||||| ||||||| | |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2818830 |
ttacgcaaaatggatgacaggttactgattatagaggtaaggaaatacctagaacataagaggtatttaatattctttgatgatgtatggcaagaagatt |
2818929 |
T |
|
| Q |
104 |
tttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaaatc |
203 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2818930 |
tttccgaccaggttgaatttgccatgcccaataacaacaaaggtagtaggatcataatcaccacaagaatgatgcaagttgcagattttttcaagaaatc |
2819029 |
T |
|
| Q |
204 |
ttttctagttcatgttca |
221 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2819030 |
atttctagttcatgttca |
2819047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5413156 - 5413376
Alignment:
| Q |
1 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| || ||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
5413156 |
atgttacacaaaatggatgaccggtcactgattatagaagtgaggcaatacctgcaacataagaggtatttgatattctttgatgatgtatggcaacaag |
5413255 |
T |
|
| Q |
101 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
200 |
Q |
| |
|
|||| || |||||| |||||||||| || || || |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
5413256 |
atttctctgaccaggttgaatttgcgatgcctaaaaacaataaaggtagtaggatcataatcaccactagaatgatgcaagttgcggattttttcaaaaa |
5413355 |
T |
|
| Q |
201 |
atcttttctagttcatgttca |
221 |
Q |
| |
|
||| |||||||| ||||||| |
|
|
| T |
5413356 |
atcctttctagtatatgttca |
5413376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2769339 - 2769558
Alignment:
| Q |
1 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| | || | || ||| ||||||| ||||||| | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2769339 |
atgttacacaaaatggatgacatgtcactggtaatagaggtaaggaaatacctacaacataagaggtatttgatattctttgatgatgtatggcaagaag |
2769438 |
T |
|
| Q |
101 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
200 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||| || ||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
2769439 |
atttttccgaccaggttgaattttccatgccaaataacaataaacgtagtaggatcataataaccacaagaatgatgcatgttgcagattttttcaagaa |
2769538 |
T |
|
| Q |
201 |
atcttttctagttcatgttc |
220 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
2769539 |
atcctttctagttcatgttc |
2769558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2749265 - 2749474
Alignment:
| Q |
1 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| || ||||||||||||||||| ||||||| | ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
2749265 |
atgttacacaaaatggatgaccagtcactaattatagaagtgaggcaatacctgcaacataagaggtatttgatattctttgatgacgtatggcaagaag |
2749364 |
T |
|
| Q |
101 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
200 |
Q |
| |
|
||||| | |||||| || |||||||||| |||||||||||||||||| ||||||| || |||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
2749365 |
attttgcggaccaggttcaatttgccatgccaaataacaataaaggtagtaggattatcatcaccactagaatgatgtatgttgcagattttttcaaaaa |
2749464 |
T |
|
| Q |
201 |
atcttttcta |
210 |
Q |
| |
|
||| |||||| |
|
|
| T |
2749465 |
atcctttcta |
2749474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2838468 - 2838259
Alignment:
| Q |
1 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
100 |
Q |
| |
|
||||| ||||||| ||||||| ||||||| ||| | |||||||||||||||| ||||||| | ||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
2838468 |
atgttgcacaaaaaggatgaccagtcactgattgaagaagtgaggcaatacctccaacataagaggtacttgatattctttgatgatgtttggcaagaag |
2838369 |
T |
|
| Q |
101 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2838368 |
atttttccgaccagattgaatttgccatgcctaataacaataaaggtagtaggatcataatcactactagaatgatgcatgttgcagaatttttcaagaa |
2838269 |
T |
|
| Q |
201 |
atcttttcta |
210 |
Q |
| |
|
||| |||||| |
|
|
| T |
2838268 |
atcctttcta |
2838259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6020 - 5800
Alignment:
| Q |
1 |
atgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcgatgatgtatggcaagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| || ||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6020 |
atgttacacaaaatggatgacaagtcattaattatagaagtgaggcaatacctgcaacataagaggtatttgatattctttgatgatgtatggcaagaag |
5921 |
T |
|
| Q |
101 |
atttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaagttgcagattttttcaagaa |
200 |
Q |
| |
|
||||||| |||||| ||||||||||||| || ||||||||||||||| ||||||| ||||||||||| |||||||||| ||||| || ||||||||||| |
|
|
| T |
5920 |
atttttctgaccaggttgaatttgccatgcctaataacaataaaggtagtaggattataatcaccacaagaatgatgcttgttgccgaatttttcaagaa |
5821 |
T |
|
| Q |
201 |
atcttttctagttcatgttca |
221 |
Q |
| |
|
||| ||| ||||||||||||| |
|
|
| T |
5820 |
atcctttatagttcatgttca |
5800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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