View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_6 (Length: 497)
Name: NF3949_low_6
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 30646497 - 30646989
Alignment:
| Q |
1 |
caaccaaagaaactgccaaaaaaccttctcaaaccaccacctctttgtctttctctactccctctagaagaccaagaaatcctcctaggttcaccaccat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30646497 |
caaccaaagaaactcccaaaaaaccttctcaaaccaccacctctttgtctttctctactccctctagaagaccaagaaatcctcctaggttcaccaccat |
30646596 |
T |
|
| Q |
101 |
tattaaacccaccatccatttcagtataaacaacaggtaactctctctcagcacctctcctcccacctgaaaatctccccacagcaaaaccaccaccagg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30646597 |
tattaaacccaccatccatttcagtataaacaacaggtaactctctctcagcacctctcctcccacccgaaaatctccccacagcaaaaccaccaccagg |
30646696 |
T |
|
| Q |
201 |
caatctccaaatagtcaacccaacattactctcttcctcattcaaaccaaccgattgctgcgactccacctgcgacc------------gtgattgtgat |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
30646697 |
caatctccaaatagtcaacccaacattactctcttcctcattcaaaccaaccgattgctgcgactccacctgcgaccatgattgtgattgtgattgcgat |
30646796 |
T |
|
| Q |
289 |
tgcaattgattaccatttccagcatcagaatcagtcggtaactcatgtctacaaaccggacacgaattatgcagtgcaagccaaggtaaaatacaatcag |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30646797 |
tgcaattgattaccatttccagcatcagaatcagtcggtaactcatgtctacaaaccggacacgaattatgcagtgcaagccaaggtaaaatacaatcag |
30646896 |
T |
|
| Q |
389 |
gatgataaatatgcttacaaggcatttctctaacaacagtacctaactcaaaagcttccatacaaacagcacaatgtgattccatttccaaat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30646897 |
gatgataaatatgcttacaaggcatttctctaacaacagtacctaactcaaaagcttccatacaaacagcacaatgtgattccatttccaaat |
30646989 |
T |
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