View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_7 (Length: 468)
Name: NF3949_low_7
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 7998344 - 7997902
Alignment:
| Q |
16 |
gaaattgttgtaggggcctgagaaagtttctaacgaagaaagcaagaataatctcaaaaccatcgttggtgtgtttggagctgtggcagcatcttttgtt |
115 |
Q |
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| T |
7998344 |
gaaattgttgtaggggcctgagaaagtttctaacgaagaaagcaagaataatctcaaaaccatcgttggtgtgtttggagctgtggcagcatcttttttt |
7998245 |
T |
|
| Q |
116 |
atgggagtagctgttggtgtagtttataaatctcagggaatgtaatggtaagttataataggttgctttaggtgtacaccctgaatttcannnnnnnnnn |
215 |
Q |
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| T |
7998244 |
atgggagtagctgttggtgtagtttataaatctcagggaatgtaatggtaagttataataggatgctttaggtgtacaccctgaatttcatttttttttt |
7998145 |
T |
|
| Q |
216 |
nnccttgcttccttgattctgtttttaagctcataaatgtatttacttttcttattttgattttcatccacataaatcatggaggataggggccattgga |
315 |
Q |
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| T |
7998144 |
--ccttgcttccttgattctgtttttaagctcataaatgtatttagttttcttattttgattttcatccacatta-tcatggaggataggggccattgga |
7998048 |
T |
|
| Q |
316 |
ctaattcatgctctatttaaaggctttatttacatccgtctcggaaacaaatttgtccaatgtttttagaattagattcgttcgagctaatttaattatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
7998047 |
ctaattcatgctctatttaaaggctttatttacatccgtctcggaaacaaatttgtccaatgtttttagaattagattcgtttgagccaatttaattatg |
7997948 |
T |
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| Q |
416 |
atttagaggtcttgccgatacacttttaattttgtcctatgcttct |
461 |
Q |
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| T |
7997947 |
atttagaggtcttgccgatacacttttaattttgtccaatgtttct |
7997902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 7979751 - 7979644
Alignment:
| Q |
65 |
aatctcaaaaccatcgttggtgtgtttggagctgtggcagcatcttttgttatgggagtagctgttggtgtagtttataaatctcagggaatgtaatggt |
164 |
Q |
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|||||||||| | |||||||||||||||||||| |||| || |||||||||||||||||||| |||| |||||||||| || |||||||||||| |
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| T |
7979751 |
aatctcaaaatcttcgttggtgtgtttggagctatggctgcggcttttgttatgggagtagctattggcaagacttataaatctaagagaatgtaatggt |
7979652 |
T |
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| Q |
165 |
aagttata |
172 |
Q |
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||||||| |
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| T |
7979651 |
gagttata |
7979644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 7979122 - 7979048
Alignment:
| Q |
313 |
ggactaattcatgctctatttaaaggctttatttacatccgtctcggaaacaaatttgtccaatgtttttagaat |
387 |
Q |
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||||||||||||| |||||| |||||||||||||||||||| || | |||||||| || ||| |||||||||| |
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| T |
7979122 |
ggactaattcatgttctattagaaggctttatttacatccgtatcaaacacaaatttatcaaatatttttagaat |
7979048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 24224682 - 24224588
Alignment:
| Q |
52 |
agaaagcaagaataatctcaaaaccatcgttggtgtgtttggagctgtggcagcatcttttgttatgggagtagctgttggtgtagtttataaat |
146 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||| |||||| |||||| ||||||||||||| |
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| T |
24224682 |
agaaagcaagaataatctcaaaaccatcgttgatgtgtttggagctgtgacagcagcttttattatgtgagtagttgttggcgtagtttataaat |
24224588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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