View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3949_low_8 (Length: 466)
Name: NF3949_low_8
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 29008847 - 29009272
Alignment:
| Q |
18 |
gttaccaccacaaacgcaacggaagagaattgaagccaagacgaccacgaacatagctttcactgcccagactggcctcattttcctannnnnnnnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29008847 |
gttaccaccacaaacgcaacggaagagaatcgaagccaagacgaccacgaacatagctttcactgcccagactggcctcattttcctacaaatcaaacca |
29008946 |
T |
|
| Q |
118 |
nnnnnnnnnnnncacagagttaactatagcttcgattcaaattcttcatctaattgaatgaatataacaccgtaacagtgtcaaatgaaattgaagaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
29008947 |
aaaaatcaaaaacacagagttaactatagcttcgattcaaattcttcatctaatcgaatgaatacaacaccgtaacagtatcaaatgcaattgaagaatt |
29009046 |
T |
|
| Q |
218 |
agtttcagtgaaaatagtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatttaat |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29009047 |
agtttcagtgaaaattgtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatgtaat |
29009146 |
T |
|
| Q |
318 |
caagaagttgaagcgaacatatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaatttggttatgtacctgcaaattcagaaagt |
417 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29009147 |
caagaagttgaagcgaacctatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaatgtggttatgtacctgcaaattcagaaagt |
29009246 |
T |
|
| Q |
418 |
gaaatctcagagcaatgaagaagaag |
443 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29009247 |
gaaatctcagagcaatgaagaagaag |
29009272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University