View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3949_low_9 (Length: 423)
Name: NF3949_low_9
Description: NF3949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3949_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 33367131 - 33367529
Alignment:
| Q |
8 |
tagcataggagtaaatagcttgaaactcaaattcaaatcaagacaggaaaaaagtggatttaattatctggtttttctaagggccctaccaatttaattc |
107 |
Q |
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| T |
33367131 |
tagcataggagtaaatagcttgaaactcaaattcaaatcaagacaggaaaaaagtggatttaattatctggtttttctaagggccctaccaatttaattc |
33367230 |
T |
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| Q |
108 |
cttcaatcattccctggaggcatttaaatgtgaaattcaatttatgcaacaggatactcgtgattcgtgaacatgttttctaacccatgcagagttataa |
207 |
Q |
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| T |
33367231 |
cttcaatcattccctggaggcatttaaatgtgaaattcaatttatgcaacaggatactcgtgattcgtgaacatgttttctaacccatgcagagttataa |
33367330 |
T |
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| Q |
208 |
ggtggattggaaaagaaaattaacacttttgttctattattaagaatttaagagatatnnnnnnnnnnnnnnnnnnnntaatactcctacacaattttac |
307 |
Q |
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| T |
33367331 |
ggtggattggaaaagaaaattaacacttttgttctattattaagaatttaagagatataaaaaaggaaaaacttaaaatagtactcctacacaattttac |
33367430 |
T |
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| Q |
308 |
tgggagctcgaacttttgcaaaactcaaaactctcaccattttcggtttcactctttatcacaaaatgccttaactgatctacattgttaaccaaattct |
407 |
Q |
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| T |
33367431 |
tggg-gcttgaacttttgcaaaactcaaaactctcaccattttcggtttcactctttatcacaaaatgccttaactgatctacattgttaaccaaattct |
33367529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 33371640 - 33371730
Alignment:
| Q |
317 |
gaacttttgcaaaactcaaaactctcaccattttcggtttcactctttatcacaaaatgccttaactgatctacattgttaaccaaattct |
407 |
Q |
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|||||| ||||||||||| |||| |||||| | |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33371640 |
gaacttctgcaaaactcagaactttcaccactgtcggtttcactcttcaccacaaaatgccctaactgatctacattgttaaccaaattct |
33371730 |
T |
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