View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3950_high_4 (Length: 404)
Name: NF3950_high_4
Description: NF3950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3950_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 13910851 - 13911084
Alignment:
| Q |
16 |
cacaacggtcaccgtcaaaacgctaccgtttagggtttccatctccaaaaccctaaaacacgatgtacatcaaggaaatctgcctcgaaggattcaaatc |
115 |
Q |
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| T |
13910851 |
cacaacggtcaccgtcaaaacgctaccgtttagggtttccatctccaaaaccctaacacacgatgtacatcaaggaaatctgcctcgaaggattcaaatc |
13910950 |
T |
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| Q |
116 |
ctacgcaacacgcaccgtcgttcctggattcgaccgattcttcaacgcaatcaccggtttaaacggttccggtaaatcgaacattctcgattcgatttgc |
215 |
Q |
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| T |
13910951 |
ctacgcaacacgcaccgtcgttcctggattcgaccgattcttcaacgcaatcaccggtttaaatggttccggtaaatcgaatattctcgattcgatttgc |
13911050 |
T |
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| Q |
216 |
ttcgttcttggaatcaccaatttgacacaggttc |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
13911051 |
ttcgttcttggaatcaccaatttgacacaggttc |
13911084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 36093459 - 36093590
Alignment:
| Q |
256 |
ttcactgaccaagaaatgcttgaaagacttagaagcaaaaatgcacgaagtcgtaccaagaaaatcagaatctgtttctgtgtacaatagatata--tat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
36093459 |
ttcactgaccaagaaatgcttgaaagacttagaagcaaaaatgcacgaagtcgtaccaagaaaatcagaatctgtttctgtgtacaatagatatattttt |
36093558 |
T |
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| Q |
354 |
atttttctttttcatgtttcattagttccaat |
385 |
Q |
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| T |
36093559 |
ttttttctttttcatgtttcattagttccaat |
36093590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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